View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21281_high_6 (Length: 411)
Name: NF21281_high_6
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 8355034 - 8354629
Alignment:
| Q |
18 |
agaaagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggagcaatccgagtaat--tcaaggataggatag-----ata |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| |
|
|
| T |
8355034 |
agaaagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggaccaatccgagtaatattcaaggataggataggatagata |
8354935 |
T |
|
| Q |
111 |
agtaatcttattaaaatagatagactagggtgtatttttgaactgagtctcttacaacaacaaaaacaaaacagttatccatgatatatctat------- |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8354934 |
agtaatcttattaaaatagatagactagggtgtatttttgaactgagtct--tacaacaacaaaaacaaaacagttatccatgatatatatatatatata |
8354837 |
T |
|
| Q |
204 |
-----cattcccaaagcaaaaggttttaggtt-----gcaggggaagcattagcaatgtcaatgacaaaacggtaacgaacatcattcttcacaagacgc |
293 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8354836 |
tatatcattcccaaagcaaagggttttaggttaggttgcaggggaagcattagcaatgtcaatgacaaaacggtaacgaacatcattcttcaaaagacgc |
8354737 |
T |
|
| Q |
294 |
tgaaaagcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccacaaacatccaacatttcttgagtctcttttattc |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8354736 |
tgaaaagcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccacaaacatccaacatttcttgagtctcttttattc |
8354637 |
T |
|
| Q |
394 |
ctcctatg |
401 |
Q |
| |
|
|||||||| |
|
|
| T |
8354636 |
ctcctatg |
8354629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University