View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_1 (Length: 532)
Name: NF21281_low_1
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 10469157 - 10469281
Alignment:
| Q |
1 |
cttcatcatcttcttctacttcctcatctctcagtttctgaatcgctgattcaactgcttttttgtatgattcagcagcgatttcacccggaattaacat |
100 |
Q |
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| T |
10469157 |
cttcatcatcttcttcaacttcctcatctctcagtttctgaatcgctgattcaactgcttttttgtatgagtcatcagcgattccactcggaattaactt |
10469256 |
T |
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| Q |
101 |
ccccctacaatgtaaccaccaccac |
125 |
Q |
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| T |
10469257 |
tccactacaatgcaaccaccgccac |
10469281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 10469602 - 10469669
Alignment:
| Q |
360 |
ggtgctgcagctactttccgatataaaatcataaaacagagcaaagaaccacacgacgtcgtttcagc |
427 |
Q |
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| T |
10469602 |
ggtgctgcagctactttccgatataaaatcataaaacagagcaaagaaccacacgacgtcgtttcagc |
10469669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 227 - 337
Target Start/End: Original strand, 10469383 - 10469484
Alignment:
| Q |
227 |
cgtatttattttattacaaattttggctgttaaaagaaatttctctgttatcagtgcaatagaaagcacggataacacatacacaaccacaagactcaaa |
326 |
Q |
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| T |
10469383 |
cgtatttattttattagaaattttggctgttaaaagaaattaatctgttatccgtgcaatagaaagcac---taacacata------cacaagactcaaa |
10469473 |
T |
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| Q |
327 |
tagaaaatgtc |
337 |
Q |
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| T |
10469474 |
tagaaaatgtc |
10469484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 517
Target Start/End: Original strand, 10469729 - 10469762
Alignment:
| Q |
484 |
ctatttgtggattttgaatttcgttcgttggaat |
517 |
Q |
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| T |
10469729 |
ctatttgtagattttgaatttcgttcgttggaat |
10469762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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