View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_11 (Length: 324)
Name: NF21281_low_11
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 5 - 324
Target Start/End: Complemental strand, 7296921 - 7296602
Alignment:
| Q |
5 |
cgaaaaatattataaacatatgaaggaaacgagataggtagaaaatataagaccaaaagaaaacacggcatgaagggcgagtgccaagaggaaaacaaag |
104 |
Q |
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| T |
7296921 |
cgaaaaaagttataaacatatgaaggaaacgagataggtagaaaatataagaccaaaagaaaacacggcctgaagggcgagtgccaagaggaaaacaaag |
7296822 |
T |
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| Q |
105 |
tagccattgaagaggggtttttgatcgacgccaaaaccatcgtgtttctttgatttcagagacggtggagagtaatattccaaggaatatgatggtggat |
204 |
Q |
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| T |
7296821 |
tagccattgaagaggggtttttgatcgacgccaaaaccatcgtgtttctttgatttcagagacggtggagagtaatattccaaggaatatgatggtggat |
7296722 |
T |
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| Q |
205 |
acgatggacacggtgagagaatgaagtgcaggtaaagggccaagaggaatatgtttggtatggcaaagaaagatagataataaaaggtggagtaaaagag |
304 |
Q |
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| T |
7296721 |
acgatggacacggtgagagaatgaagtgcaggtaaagggccaagaggaatatgtttggtatggcaaagaaagatagataataaaaggtggagtaaaagag |
7296622 |
T |
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| Q |
305 |
aggttacaatgtaaattgct |
324 |
Q |
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| T |
7296621 |
aggttacaatgtaaattgct |
7296602 |
T |
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