View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_12 (Length: 298)
Name: NF21281_low_12
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 21243191 - 21242912
Alignment:
| Q |
2 |
gaggagcagcac-agacccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaaccca |
100 |
Q |
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| T |
21243191 |
gaggagcagcaccagacccaatactcttcaaagaagaaacatcatatttcccaaccacactctgtttcgctaaagcaagaatcatcggtggcacaaccca |
21243092 |
T |
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| Q |
101 |
caagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243091 |
caagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtat |
21242992 |
T |
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| Q |
201 |
gttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatc |
280 |
Q |
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| T |
21242991 |
gttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatc |
21242912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 21258939 - 21258681
Alignment:
| Q |
18 |
ccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttat |
117 |
Q |
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| T |
21258939 |
ccaatactcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccacaaagttgtcactctat |
21258840 |
T |
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| Q |
118 |
acttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatcc |
217 |
Q |
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| T |
21258839 |
acttttcaatcaccttcaaaaa-ccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataaccgccaatct |
21258741 |
T |
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| Q |
218 |
aaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatc |
280 |
Q |
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| T |
21258740 |
aaacacatgaaacatcggtaaaacgcagaggaacac---atttaattcccctgctaaatcatc |
21258681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 97 - 280
Target Start/End: Complemental strand, 21254357 - 21254172
Alignment:
| Q |
97 |
cccacaagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgc |
196 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| || |
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| T |
21254357 |
cccacaaattcgtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgc |
21254259 |
T |
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| Q |
197 |
gtatgttataaccgccaatccaaacacatg---aaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatc |
280 |
Q |
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||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
21254258 |
gtatgttataaccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatc |
21254172 |
T |
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