View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21281_low_14 (Length: 285)
Name: NF21281_low_14
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 13886620 - 13886886
Alignment:
| Q |
1 |
aatagtaacgaaagatatatacgacaaacatatattttgatatatggaaatttattatggtaaatttggggtgttacagaggacactcatgatcggcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13886620 |
aatagtaacgaaagatatatacgacaaacatatattttgatatatggaaatttattatggtaaatttggggtgttacagaggacactcataatcggcctt |
13886719 |
T |
|
| Q |
101 |
agaggtggaggttacaagtgaaagatatactgagaatgcatttggaagtggatgtggagaaatcttagcttgaggtggagtcttccacaactgggattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13886720 |
agaggtggaggttacaagtgaaagatatactgagaatgcatttgaaagtggatgtggagaaatcttagcttgaggtggagtcttccacaattgggattaa |
13886819 |
T |
|
| Q |
201 |
aaggaaacaaatggtggcatcataatggtgcaactatggagtcattgtgtgttatcctttagttgag |
267 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
13886820 |
aaggaaacaaatggtggcatcagaatgatgcaactatgtagtcgttgtgtgttatcctctagttgag |
13886886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 43403212 - 43403172
Alignment:
| Q |
141 |
tttggaagtggatgtggagaaatcttagcttgaggtggagt |
181 |
Q |
| |
|
||||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
43403212 |
tttggaagttgaggtggagaaatctcagcttgaggtggagt |
43403172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 16676812 - 16676862
Alignment:
| Q |
138 |
gcatttggaagtggatgtggagaaatcttagcttgaggtggagtcttccac |
188 |
Q |
| |
|
|||||||||||| || ||||||||||| || |||||||||||||||||||| |
|
|
| T |
16676812 |
gcatttggaagttgaggtggagaaatcctaacttgaggtggagtcttccac |
16676862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 28861818 - 28861851
Alignment:
| Q |
85 |
actcatgatcggccttagaggtggaggttacaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28861818 |
actcatgatcggccttagaggtggaggttacaag |
28861851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 7858589 - 7858539
Alignment:
| Q |
138 |
gcatttggaagtggatgtggagaaatcttagcttgaggtggagtcttccac |
188 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
7858589 |
gcatttggaagttgagatggagaaaacttagcttgaggtgtagtcttccac |
7858539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 16136232 - 16136340
Alignment:
| Q |
157 |
gagaaatcttagcttgaggtggagtcttccacaactgggattaaaaggaaacaaatggtggcatcataatggtgcaactatggagtcattgtgtgttatc |
256 |
Q |
| |
|
||||||||| | |||||| ||||||||||||| | |||| || ||| |||||||||||||| | |||| | |||||||| |||| ||||||||||| |
|
|
| T |
16136232 |
gagaaatctcatcttgagatggagtcttccactatcgggactaggtggagacaaatggtggcataagaatg-tacaactatgtagtccttgtgtgttatg |
16136330 |
T |
|
| Q |
257 |
ctttagttga |
266 |
Q |
| |
|
|||||||||| |
|
|
| T |
16136331 |
ctttagttga |
16136340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 38281333 - 38281447
Alignment:
| Q |
139 |
catttggaagtggatgtggagaaatcttagcttgaggtggagtcttccacaactgggattaaaaggaaacaaatggtggcatcataatggtgcaactatg |
238 |
Q |
| |
|
||||||||||| || ||||||||| || | |||||| | ||||||||||| | ||||| || || | || ||||||||| ||||||||| ||||||| |
|
|
| T |
38281333 |
catttggaagttgaggtggagaaagctcaacttgagtttgagtcttccactagtgggactaggagtagactaatggtggccccataatggtaaaactatg |
38281432 |
T |
|
| Q |
239 |
gagtcattgtgtgtt |
253 |
Q |
| |
|
||||| ||| ||||| |
|
|
| T |
38281433 |
gagtccttgcgtgtt |
38281447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 18198470 - 18198354
Alignment:
| Q |
139 |
catttggaagtggatgtggagaaatcttagcttgaggtggagtcttccacaactgggattaaaaggaaacaaatggtggcatcataatggtgcaactatg |
238 |
Q |
| |
|
|||||| |||| || ||||||||| || | ||||| ||||| |||||||| | ||||| || |||| | |||||||| || | || ||| ||||||| |
|
|
| T |
18198470 |
catttgaaagttgaggtggagaaaactcaacttgatgtggattcttccactagtgggactaggaggagaaaaatggtgtcaccgaaacggtacaactata |
18198371 |
T |
|
| Q |
239 |
gagtcattgtgtgttat |
255 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18198370 |
gagtcattgtgtgttat |
18198354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University