View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_17 (Length: 255)
Name: NF21281_low_17
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 52809675 - 52809432
Alignment:
| Q |
12 |
gaagttcaatgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttctttaatggtca |
111 |
Q |
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| T |
52809675 |
gaagttcaatgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttctttaatggtca |
52809576 |
T |
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| Q |
112 |
agcaccagatggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatgcttgttcacgtggtcatgaaa |
211 |
Q |
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| T |
52809575 |
agcaccagatggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatgcttgttcacgtggtcatgaaa |
52809476 |
T |
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| Q |
212 |
atcactgcaagagggaatgacaaaggatggattccagagaacct |
255 |
Q |
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| T |
52809475 |
atcactgcaagagggaatgacaaaggttggattccagagaacct |
52809432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 397759 - 397928
Alignment:
| Q |
21 |
tgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccaga |
120 |
Q |
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| T |
397759 |
tgagtatattctgtcaaattccacagtatgttcttgttggtgcttcagaagtttttatgtatgtgggtcagttggagttcttcaatggtcaagcacctga |
397858 |
T |
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| Q |
121 |
tggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatg |
190 |
Q |
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| T |
397859 |
tggcataaaaagctttggaagttcactttgtatggcatcaatttctcttggaaactatgttagcagcatg |
397928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 3803025 - 3802856
Alignment:
| Q |
21 |
tgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccaga |
120 |
Q |
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| T |
3803025 |
tgagtatattctatcaaattccacagtatgttcttgttggggcttcagaagtttttgtgtatgtgggtcagttggagttcttcaatggtcaagccccgga |
3802926 |
T |
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| Q |
121 |
tggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatg |
190 |
Q |
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| T |
3802925 |
tggcataaaaagctttggaagttcactttgtatggcttcaatttctcttggaaactatgttagcagcatg |
3802856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 2745785 - 2745916
Alignment:
| Q |
65 |
tcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccagatggaataaaaagttttgggagttcactttgtatggcttcaattt |
164 |
Q |
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| T |
2745785 |
tcagaagttttcatgtatgttggtcaattggagtttttcaattcacaggcacctgatggattgaaaagctttggaagtgcactttgtatgacttcaatat |
2745884 |
T |
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| Q |
165 |
ctcttggaaactatgtgagtagcatgcttgtt |
196 |
Q |
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| T |
2745885 |
cattaggaaactatgttagtagcttgcttgtt |
2745916 |
T |
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