View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_18 (Length: 250)
Name: NF21281_low_18
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 10033333 - 10033567
Alignment:
| Q |
1 |
caccttcgatcagaagtgttggtgctaaaatataccaaattaatttcagcatatgataagagttgactgacctgtgtaatgtcctcttgcaaaattatta |
100 |
Q |
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| T |
10033333 |
caccttcgatcaaaagtgttggtgctaaaatataccaaatttatttcagcatatgataagagttgactgacctgtgtaatgtcctcttgcaaaattatta |
10033432 |
T |
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| Q |
101 |
gcagcatcttctttgccagtaattaactgttctggatgaaaaagttgtctataaggaccagatctaatttcatcaattacagtaggctctagatcaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10033433 |
gcagcatcttctttgccagtaattaactgttctggatgaaaaagttgtctataaggaccagatctaatttcatcaattacagtaggctctagatcaacaa |
10033532 |
T |
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| Q |
201 |
atagagcccttggaacatattggccatttccaatt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10033533 |
atagagcccttggaacatattggccatttccaatt |
10033567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 33269561 - 33269417
Alignment:
| Q |
74 |
gtgtaatgtcctcttgcaaaattattagcagcatcttctttgccagtaattaactgttctggatgaaaaagttgtctataaggaccagatctaatttcat |
173 |
Q |
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||||| ||||| ||||||||||||||||| |||||||| ||||||| |||||| || || || |||||||||||||| |||| ||||| ||| | ||||| |
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| T |
33269561 |
gtgtagtgtccccttgcaaaattattagcggcatcttccttgccagaaattaattgctcagggtgaaaaagttgtctgtaagaaccagttcttacttcat |
33269462 |
T |
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| Q |
174 |
caattacagtaggctctagatcaacaaatagagcccttggaacat |
218 |
Q |
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| T |
33269461 |
cgataacagtaggttccagatcaacaaataaggcccttggtacat |
33269417 |
T |
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