View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_20 (Length: 239)
Name: NF21281_low_20
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36523587 - 36523367
Alignment:
| Q |
1 |
cctggtgatgatgtattttacaatgcttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggcgtttatcctgagatgaattggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523587 |
cctggtgatgatgtattttacaatgcttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggcgtttatcctgagatgaattggt |
36523488 |
T |
|
| Q |
101 |
ttttccttattggtctacttgcacctgttccagtgtggcttctttctctcaaatttcgtaaccaaaagtggattcaactcattaacattcctattatcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523487 |
ttttccttattggtctacttgcacctgttccagtgtggcttctttctctcaaatttcgtaaccaaaagtggattcaactcattaacattcctattatcgc |
36523388 |
T |
|
| Q |
201 |
cgcaggtgcatctggcattcc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36523387 |
cgcaggtgcatctggcattcc |
36523367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 36530420 - 36530207
Alignment:
| Q |
1 |
cctggtgatgatgtattttacaatgcttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggcgtttatcctgagatgaattggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |
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| T |
36530420 |
cctggtgatgatgtattttacaatgcttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggtgtttatcccgaattgaattggt |
36530321 |
T |
|
| Q |
101 |
ttttccttattggtctacttgcacctgttccagtgtggcttctttctctcaaatttcgtaaccaaaagtggattcaactcattaacattcctattatcgc |
200 |
Q |
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|||||||||| |||||| | ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |
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| T |
36530320 |
ttttccttatcggtctaatcgcaccagttcccgtgtggcttctttctctcaaatttcccaaccaaaagtggattcaattcatcaacattcctattatcat |
36530221 |
T |
|
| Q |
201 |
cgcaggtgcatctg |
214 |
Q |
| |
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||||||||||||| |
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| T |
36530220 |
tgcaggtgcatctg |
36530207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 36536032 - 36535835
Alignment:
| Q |
1 |
cctggtgatgatgtattttacaatgcttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggcgtttatcctgagatgaattggt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
36536032 |
cctggtgatgatgcattttacaatgcttccattatatggggagttgtagggccaaagagaatgtttaccaatgacggcgtttatcctgggatgaattggt |
36535933 |
T |
|
| Q |
101 |
ttttccttattggtctacttgcacctgttccagtgtggcttctttctctcaaatttcgtaaccaaaagtggattcaactcattaacattcctattatc |
198 |
Q |
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||||||||||||| ||| |||||||||| || ||||||||||||||| ||||||||| |||||| ||||||||| |||| || ||||||||||||||| |
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| T |
36535932 |
ttttccttattggcctaattgcacctgtaccggtgtggcttctttctatcaaatttcctaaccacaagtggattaaacttatcaacattcctattatc |
36535835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 42059801 - 42059988
Alignment:
| Q |
1 |
cctggtgatgatgtattttacaatgcttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggcgtttatcctgagatgaattggt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| | || ||||||||||| || || |||| |||| |||||||||| |
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| T |
42059801 |
cctggtgatgatgtgttttacaatgcttcaatcatatggggagtagtaggaccacaaaggatgtttaccaaggatggaatttaccctggaatgaattggt |
42059900 |
T |
|
| Q |
101 |
ttttccttattggtctacttgcacctgttccagtgtggcttctttctctcaaatttcgtaaccaaaagtggattcaactcattaacat |
188 |
Q |
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||||||| || ||||||||||| |||||||||||||||||||| ||| ||||| | ||||| ||||||||| ||||||| ||||| |
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| T |
42059901 |
ttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacccgaaccacaagtggattgaactcatcaacat |
42059988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 42083678 - 42083865
Alignment:
| Q |
1 |
cctggtgatgatgtattttacaatgcttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggcgtttatcctgagatgaattggt |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||| | ||||| ||||| || ||||| ||||| || || | || |||| |||||||||| |
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| T |
42083678 |
cctggtgatgaggttttttacaatgcttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaaggatggaatataccctggaatgaattggt |
42083777 |
T |
|
| Q |
101 |
ttttccttattggtctacttgcacctgttccagtgtggcttctttctctcaaatttcgtaaccaaaagtggattcaactcattaacat |
188 |
Q |
| |
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||||||| || ||||||||||| |||||||| |||||| |||| ||| ||||| | ||||| ||||||||| ||||||| ||||| |
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| T |
42083778 |
ttttcctcatcggtctacttgcgcctgttccggtgtggtttctagctcgcaaatacccgaaccacaagtggattgaactcatcaacat |
42083865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 42075098 - 42075295
Alignment:
| Q |
1 |
cctggtgatgatgtattttacaatgcttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggcgtttatcctgagatgaattggt |
100 |
Q |
| |
|
|||||||| || || |||||||||||||||||||| |||||| | ||||| ||||| || ||||| ||||| || || | || |||| ||||||||| |
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| T |
42075098 |
cctggtgacgaggttttttacaatgcttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaaggatggaatataccctggattgaattggt |
42075197 |
T |
|
| Q |
101 |
ttttccttattggtctacttgcacctgttccagtgtggcttctttctctcaaatttcgtaaccaaaagtggattcaactcattaacattcctattatc |
198 |
Q |
| |
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||||||| || ||||||||||| |||||||||||||||||||| ||| ||||| | |||| |||||||||| ||||| | ||||| || |||||| |
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|
| T |
42075198 |
ttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacccaaaccgaaagtggattgaactcgtcaacatgccaattatc |
42075295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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