View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_21 (Length: 231)
Name: NF21281_low_21
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_21 |
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| [»] scaffold0770 (1 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 50513739 - 50513942
Alignment:
| Q |
11 |
gagaagaagaaaaaagacacaataagatcacataagtttttaagagttcttcttctacaatactcttacataccctctcaaattgaaatttcatatactc |
110 |
Q |
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| T |
50513739 |
gagaagaagaaaaaagacacaataagatcacataagtttttaagagttcttcttcaacaatactcttacataccctctcaaattgaaatttcatatactc |
50513838 |
T |
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| Q |
111 |
atatgtactaaagagttgttcataagacatgtttattggtatgtgtgaacttgaaaggctaagaataaatttaaaaggttgaactcaaaataaatccaca |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50513839 |
atatgtactaaagagttgttcataagacatatttattagtctgtgtgaacttgaaaggctaagaataaatttaaaaggttgaactcaaaataaatccaca |
50513938 |
T |
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| Q |
211 |
ataa |
214 |
Q |
| |
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|||| |
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| T |
50513939 |
ataa |
50513942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 50565917 - 50566139
Alignment:
| Q |
11 |
gagaagaagaaaaaagacacaataagatcacataagtttttaagagttcttcttctacaatactcttacataccctctcaaattgaaatttcatatactc |
110 |
Q |
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|||||||| ||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50565917 |
gagaagaa-aaaaaaggcacaataagataacataattttttaagaattcttcttctacaatactcttacataccctctcaaattgaaatttcatatactc |
50566015 |
T |
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| Q |
111 |
atatgtactaaagagttgttcataagacatgttt----------------------attggtatgtgtgaacttgaaaggctaagaataaatttaaaagg |
188 |
Q |
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|| |||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||| |||||||||| |
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| T |
50566016 |
at--gtactaaagagttgttcataagacatatttataatcaatttatgcggtagtcattagtttgtgtgaacttgaaaggctaagaatacatttaaaagg |
50566113 |
T |
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| Q |
189 |
ttgaactcaaaataaatccacaataa |
214 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
50566114 |
ttgaactcaaaataaacccacaataa |
50566139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 38924497 - 38924568
Alignment:
| Q |
11 |
gagaagaagaaaaaagacacaataagatcacataagtttttaagagttcttcttctacaatactcttacata |
82 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |
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| T |
38924497 |
gagaagaagaaaaaagacacaataagatcacataagtttttaaaaattcttcttatacaatactcttacata |
38924568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 4586 - 4518
Alignment:
| Q |
60 |
ttcttctacaatactcttacataccctctcaaattgaaatttcatatactca-tatgtactaaagagttgttca |
132 |
Q |
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| T |
4586 |
ttcttctacaatactcttac-----ctctcaaattgaaatttcatacactcattatgtactaaggagttgttca |
4518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 102890 - 102822
Alignment:
| Q |
60 |
ttcttctacaatactcttacataccctctcaaattgaaatttcatatactca-tatgtactaaagagttgttca |
132 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
102890 |
ttcttctacaatactcttac-----ctctcaaattgaaatttcatacactcattatgtactaaggagttgttca |
102822 |
T |
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