View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_3 (Length: 483)
Name: NF21281_low_3
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 6 - 465
Target Start/End: Complemental strand, 42018329 - 42017871
Alignment:
| Q |
6 |
agcagcacagacaacagcaagagcagcataagtatcttcttgatcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018329 |
agcagcacagacaacagcaagagcagcataagtatcttcttgttcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccg |
42018230 |
T |
|
| Q |
106 |
ctgttgattcgagaaaccgccgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42018229 |
ctgttgattcgagaaaccgccgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactg |
42018130 |
T |
|
| Q |
206 |
acacctgactctgacaaaatggaagagtttccgttttcttggcagcagctgactccatttggttggcagcagctcgtgaaattgtctagagatccattca |
305 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018129 |
acacctgactctgacaaaa-ggaagagtttccgttttcttggcagcagctcactccatttggttggcagcagctcgtgaaattgtctagagatccattca |
42018031 |
T |
|
| Q |
306 |
gtacagggttttcttctaaatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgat |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018030 |
gtacagggttttcttctaaatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgat |
42017931 |
T |
|
| Q |
406 |
ggaaataatcaaagaagtaaacaatgaatacaagtgagaatatgctccagggacatttgt |
465 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42017930 |
ggaaataatcaaagaagtaaacaatgaatacaagtgagaatatgctccagggacatttgt |
42017871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 6 - 465
Target Start/End: Complemental strand, 1251549 - 1251091
Alignment:
| Q |
6 |
agcagcacagacaacagcaagagcagcataagtatcttcttgatcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251549 |
agcagcacagacaacagcaagagcagcataagtatcttcttgttcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccg |
1251450 |
T |
|
| Q |
106 |
ctgttgattcgagaaaccgccgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactg |
205 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251449 |
ctgttgattcgagaaaccgacgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactg |
1251350 |
T |
|
| Q |
206 |
acacctgactctgacaaaatggaagagtttccgttttcttggcagcagctgactccatttggttggcagcagctcgtgaaattgtctagagatccattca |
305 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251349 |
acacctgactctgacaaaa-ggaatagtttccgttttcttggcagcagctgactccatttggttggcagcagctcgtgaaattgtctagagatccattca |
1251251 |
T |
|
| Q |
306 |
gtacagggttttcttctaaatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251250 |
gtacagggttttcttctaaatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgat |
1251151 |
T |
|
| Q |
406 |
ggaaataatcaaagaagtaaacaatgaatacaagtgagaatatgctccagggacatttgt |
465 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251150 |
ggaaataatcaaataagtaaacaatgaatacaagtgagaatatgctccagggacatttgt |
1251091 |
T |
|
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