View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21281_low_4 (Length: 468)
Name: NF21281_low_4
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 43083105 - 43083540
Alignment:
| Q |
18 |
catgaaacataccaacattttgtactatgactatcgaagaagccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaaa |
117 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083105 |
catgaaacataccaacagttcgtactatgactatccaagaagccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaaa |
43083204 |
T |
|
| Q |
118 |
ggaaactgctaataatatctttaggatattcattaataaaatatggatgtgatgtgtataaaaatagtgtattcagagaaggtgtcacttcaggaaatgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083205 |
ggaaactgctaataatatctttaggatattcattaataaaatatggatgtgatgtgtataaaaatagtgtattcagagaaggtgtcacttcaggaaatgg |
43083304 |
T |
|
| Q |
218 |
ttaagagctcgatctcttgctcttttgaattgagaaaattcagagaaggaaaaactcatcttgtgtgtaacggnnnnnnnnatagagattagtcacgtta |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
43083305 |
ttaagagctcaatctcttgctcttttgaattgagaaaattcagagaaggaaaaactcatcttgtgtgtaacaggtttttttatagagattagtcacgtta |
43083404 |
T |
|
| Q |
318 |
attgataataaaacttagtatatatactatatannnnnnnnnnnnngtaactagtgttcttaggacacttcttatcatctttcatgttttttctacgatt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
43083405 |
attgataataaaacttagtatatatactatatatttttggttttttgtaactagtgttcttagcacacttcttatcatcattcatattttttctaggatt |
43083504 |
T |
|
| Q |
418 |
tcaaagaatctatacaattatggggtccaatctgtg |
453 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
43083505 |
tcaaagaatctatacaattgtggggtccaatttgtg |
43083540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University