View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21281_low_5 (Length: 423)
Name: NF21281_low_5
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 4 - 408
Target Start/End: Complemental strand, 33683904 - 33683500
Alignment:
| Q |
4 |
agaaggaaggaaataacacttggcaaatcaaatgcaaagtcggcaactatgatgtagcacattaaattaattaaagagtttatagaagggaccgttgagt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33683904 |
agaaggaaggaaataacacttggcaaatcaaatgcaaagtcggcaactatgatgtagcacattaaattaattaaagagtttatagaagggaccgttgagt |
33683805 |
T |
|
| Q |
104 |
ttgcatttaaagctcatacatacgtcttaactaggccttaccactgccgtaattgtaaagcatggccactcataacaagtaaccaaaatcaacaattaag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33683804 |
ttgcatttaaagctcatacatacgtcttaactaggccttaccactgccgtaattgtaaagcatggccactcataacaagtaaccaaaatcaacaattaag |
33683705 |
T |
|
| Q |
204 |
ttaaattgaatctatttcctaaagtctataatattggttgttgacatatcaatctaatcacaaccatggcaaatgatgcagctctaagaacctctatact |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33683704 |
ttaaattgaatctatttcctaaagtctataatattggttggtgacatatcaatctaatcacaaccatggcaaatgatgcagctctaagaacctctatact |
33683605 |
T |
|
| Q |
304 |
atggctagcagcagttatattggtagttggtatatgcacatactctttcaagaagatgtttgttacctatgtgatgggtcttgttggaatttctggtgtt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33683604 |
atggctagcagcagttatattggtagttggtatatgcacatactctttcaagaagatgtttgttacctatgtgttgggtcttgttggaatttctggtgtt |
33683505 |
T |
|
| Q |
404 |
ctttt |
408 |
Q |
| |
|
||||| |
|
|
| T |
33683504 |
ctttt |
33683500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University