View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_7 (Length: 403)
Name: NF21281_low_7
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 25541169 - 25540799
Alignment:
| Q |
17 |
atgaagcaattgaagaattgtatgtaccattctctgtaacacttgaaacacatttggtggcaacaattaggcagcacaacttttgctttcacctccaagc |
116 |
Q |
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| T |
25541169 |
atgaagcaattgaagaattgtatgtaccattctctgtaacacttgaaacacatttggtggcaacaattaggcagcacaacttttgctttcacctccaagc |
25541070 |
T |
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| Q |
117 |
aaactccgcattctttttctctttcaatatcaattttagattctcttctgtctttgaaatcagtcttcttttgatatctattagcatatacttctttctg |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25541069 |
aaactccgcattctttttctctttcaatgtcaattttagattctcttctatctttgaaatcagtcttcttttgatatctattagcatatacttctttctg |
25540970 |
T |
|
| Q |
217 |
cttcctttcttccaaatctgtgacacctttctgaagttgcaatagagcaggaaatataatcgctgaaaaacatgttaagtatgtgttgattattatcatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540969 |
cttcctttcttccaaatctgtgacacctttctgaagttgcaatagagcaggaaatataatcgctgaaaaacatgttaagtatgtgttgattattatcatc |
25540870 |
T |
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| Q |
317 |
aaagaacataaaacggattccataaaaaccctgaatagcaaaacaaaacaagataacaatacattcttatt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540869 |
aaagaacataaaacggattccataaaaaccctgaatagcaaaacaaaacaagataacaatacattcttatt |
25540799 |
T |
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