View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21281_low_8 (Length: 398)
Name: NF21281_low_8
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 24634237 - 24634618
Alignment:
| Q |
8 |
gagcagagatggcatgacttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaatattaatagtcaaatggtaccgtctctcca |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24634237 |
gagctgagatggcatgacttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaatattaatagtcaaatggtatcgtctctcca |
24634336 |
T |
|
| Q |
108 |
tgccagtccggttctgatatgaaaatgaaggttaaacatgtgtatctaaagattattgtgttttattgctggaaacaagtcttacaaaagcctagttctg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24634337 |
tgccagtccggttctgatatgaaaatgaaggttaaacatgtgtatctaaagattattgtgttttattgctggaaacaagtcttacaagagcctagttctg |
24634436 |
T |
|
| Q |
208 |
atttcttgtaaatgaaatgtctcatttattgataacgtgatgaattgatcataatgaactcaatggaccttatttatacatcagtctatatgaaagtgaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24634437 |
atttcttgtaaatgaaatgtctcatttattgataacttgatgaattgatcataatgaactcaatggaccttatttatacatcagtctatatgaaagtgaa |
24634536 |
T |
|
| Q |
308 |
gaagataacaaggaacaatagctaactagtaaacaggatcttctaatttatgtttcaattgtaaacttttataagtaaattt |
389 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24634537 |
gaagataacaaggaacaatagttaagtagtaaacaggatcttctaatttatgtttcaattgtaaacttctataagtaaattt |
24634618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 24628511 - 24628548
Alignment:
| Q |
353 |
atttatgtttc-aattgtaaacttttataagtaaattt |
389 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24628511 |
atttatgtttctaattgtaaacttttataagtaaattt |
24628548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 32876858 - 32876770
Alignment:
| Q |
8 |
gagcagagatggcatgacttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaatattaatagtcaaatggta |
96 |
Q |
| |
|
|||| ||| |||| ||||||||||| ||||||||||||| |||||| | | |||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
32876858 |
gagctgagctggcctgacttgaacaatcaaaccagtgttgagtgagatcttgctagtcggtcaagtaaggtattacaagtcacatggta |
32876770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University