View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21281_low_9 (Length: 380)
Name: NF21281_low_9
Description: NF21281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21281_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 27762422 - 27762768
Alignment:
| Q |
14 |
ctctcttcccattactatatcatcaaattcaaaaggaacaaaccacagaacattctagaatggagtcatggaacgaaaccgtaacggaatccattacaaa |
113 |
Q |
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| T |
27762422 |
ctctctttccattactatatcatcaaattcaaaaggaacaaaccacagaacattctagaatggagtcatggaacgaaaccgtaacggaatccattacaaa |
27762521 |
T |
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| Q |
114 |
ccgtttaaagcaatttcaacaacgaagcaatgaatcaccaacggtatgggtaacggagttaatcaaatactttaactccgttggagttgagttaccgagt |
213 |
Q |
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| T |
27762522 |
ccgtttaaagcaatttcaacaacgaagcaatgaatcacccacggtatgggtaacggagttaatcgaatactttaactccgttggagttgagttaccgagt |
27762621 |
T |
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| Q |
214 |
tccgagttagttgaacttttggtttcgcaaatgtgttctgaaaatgtgaaggatcatccttctacatggaaatttcttcatcatgctctttcttctaagc |
313 |
Q |
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| T |
27762622 |
tccgagttagttgaacttttggtttcgcaaatgtgttctgaaaatgtgaaggatcatccttctacatggaaatttcttcatcatgctctttcttctaagc |
27762721 |
T |
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| Q |
314 |
ttatttttccgcttcagttactttcgcttttagcttataaggttttt |
360 |
Q |
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| T |
27762722 |
ttatttttccgcttcagttactttcgcttttagcttataaggttttt |
27762768 |
T |
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