View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21282_high_1 (Length: 319)
Name: NF21282_high_1
Description: NF21282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21282_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 45273424 - 45273135
Alignment:
| Q |
11 |
cagagagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273424 |
cagagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttgctgtttttgtacaggggatccaccagtaatacaaatga |
45273325 |
T |
|
| Q |
111 |
aaatttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataattaattatacagaagcgttactgcaaacttcatacac |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
45273324 |
aaatttgctcgaatgatagtataagcttcaattttcatttttcctttgatcattcaaatata----attatacagaaacgttactgcaaacttcatacac |
45273229 |
T |
|
| Q |
211 |
aaaaacgnnnnnnngcttaaccataatgttaatagaagctcttaaatgcaaatgaataattgatcatttaagaaaaaagatgcttcaaatatat |
304 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273228 |
aaaaacgtttttttgcttaaccatattgttaatagaagctattaaatgcaaatgaataattgatcatttaagaaaaaagatgcttcaaatatat |
45273135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 45269875 - 45269592
Alignment:
| Q |
12 |
agagagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |
|
|
| T |
45269875 |
agagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggagatccaccagaaatacaaacgaa |
45269776 |
T |
|
| Q |
112 |
aatttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataattaattatacagaagcgttactgcaaacttcatacaca |
211 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
45269775 |
aatttgctcgaatgaaagtataagcttcaattttca-------tttgatcattcaaatat-----attattcagaagcgttactgcaagcttcatacaca |
45269688 |
T |
|
| Q |
212 |
aaaacgnnnnnnngcttaa-ccataatgttaatagaagctcttaaatgcaaatgaat--aattgatcatttaagaaaaaagatgcttcaaatatat |
304 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45269687 |
aaaacgtttttttgcttaatccatattgttaatagaagctattaaatgcaaatgaataaaattgatcatttaagaaaaaagatgcttgaaatatat |
45269592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 45279090 - 45278935
Alignment:
| Q |
17 |
gtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaattt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
45279090 |
gtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaattatctttcctatttttgtacatgagatccaccagaaatacaaatgaaaattt |
45278991 |
T |
|
| Q |
117 |
gctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
173 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
45278990 |
gctcgaattatagtttaagcttcaattttcattttt-tttttatcattcaaatataa |
45278935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 45281758 - 45281601
Alignment:
| Q |
15 |
gagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaaaat |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| | ||||| |||| | ||||| |||| ||||||||||||||| |
|
|
| T |
45281758 |
gagtgtgaatgtgatgcatgggtcggagacaaattgttattctttgtaattatctttcgtatttttatacatgagatcccccagaaatacaaatgaaaat |
45281659 |
T |
|
| Q |
115 |
ttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
173 |
Q |
| |
|
|||||||||| ||||| | ||||| ||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
45281658 |
ttgctcgaattatagtttaagctttaattttcattttt-tttttatcattcgaatataa |
45281601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 45293101 - 45292941
Alignment:
| Q |
12 |
agagagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaa |
111 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||||| | |||||||||||| | ||| ||| | ||| | |||| |||||||||| |||||||||||| |
|
|
| T |
45293101 |
agagagtgtgaatgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaa |
45293003 |
T |
|
| Q |
112 |
aatttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
173 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45293002 |
aatttgctcgaattatagtttaagcttcaattttcatttttcttttgatcattcaaatataa |
45292941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 45302061 - 45301901
Alignment:
| Q |
12 |
agagagtgtgaatgtgatgcatggctcggagacaaattgtaattctttgtaataatctttcctgtttttgtacaggggatccaccagtaatacaaatgaa |
111 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||||| | |||||||||||| | ||| ||| | ||| | |||| |||||||||| |||||||||||| |
|
|
| T |
45302061 |
agagagtgtgaatgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaa |
45301963 |
T |
|
| Q |
112 |
aatttgctcgaatgatagtatcagcttcaattttcatttttcctttgatcattcaaatataa |
173 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45301962 |
aatttgctcgaattatagtttaagcttcaattttcatttttcttttgatcattcaaatataa |
45301901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 45278685 - 45278627
Alignment:
| Q |
246 |
aagctcttaaatgcaaatgaataattgatcatttaagaaaaaagatgcttcaaatatat |
304 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45278685 |
aagctgttatatgcaaatgaataatcgatcatttaagaaaaaagatgcttcaaatatat |
45278627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University