View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21283_high_11 (Length: 250)

Name: NF21283_high_11
Description: NF21283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21283_high_11
NF21283_high_11
[»] chr5 (3 HSPs)
chr5 (1-250)||(7154287-7154536)
chr5 (13-233)||(7131810-7132030)
chr5 (4-250)||(7141517-7141763)
[»] chr3 (4 HSPs)
chr3 (4-74)||(22986277-22986347)
chr3 (1-52)||(22971948-22971999)
chr3 (1-41)||(22941537-22941577)
chr3 (4-52)||(22946404-22946452)
[»] chr1 (3 HSPs)
chr1 (1-45)||(12636998-12637042)
chr1 (1-45)||(12609902-12609946)
chr1 (1-44)||(15885922-15885965)
[»] scaffold0554 (1 HSPs)
scaffold0554 (1-36)||(6722-6757)
[»] chr4 (2 HSPs)
chr4 (109-177)||(55954999-55955067)
chr4 (218-250)||(55955105-55955137)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 7154536 - 7154287
Alignment:
Q  1 cttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7154536 cttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtcc 7154437  T
Q  101 aatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7154436 aatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctct 7154337  T
Q  201 agggaccaataaaggtgaaggtgggtgtaacctcattgtttctttgatca 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7154336 agggaccaataaaggtgaaggtgggtgtaacctcattgtttctttgatca 7154287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 7132030 - 7131810
Alignment:
Q  13 ccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggat 112  Q
    |||||||||| ||| ||||||||||| ||| | ||||||||  ||||||| ||||| ||||||||| | |||||||||||||||||||||||||| ||||    
T  7132030 ccaaaaggaagatattcaaaattattccctctaaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggat 7131931  T
Q  113 ctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataa 212  Q
    | |||||||  |||||| |||| ||||| |||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||  |||||    
T  7131930 cccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataa 7131831  T
Q  213 aggtgaaggtgggtgtaacct 233  Q
    ||| | ||||| |||||||||    
T  7131830 aggagtaggtgagtgtaacct 7131810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 7141763 - 7141517
Alignment:
Q  4 cttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaat 103  Q
    |||||||| || |||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||    
T  7141763 cttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaat 7141664  T
Q  104 attgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagg 203  Q
    |||  ||||||||| | | |||||| |||||||| |  ||| |||||||||||||||| ||||| ||||||||  |||| | ||| ||||    ||| ||    
T  7141663 atttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgctcaatcttgg 7141564  T
Q  204 gaccaataaaggtgaaggtgggtgtaacctcattgtttctttgatca 250  Q
     ||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  7141563 aaccaacaaaggagaaggtgggtgtaacctcaatgtttctttgatca 7141517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 22986277 - 22986347
Alignment:
Q  4 cttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctc 74  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||||||||  ||||| ||  |||||||||    
T  22986277 cttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctc 22986347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22971948 - 22971999
Alignment:
Q  1 cttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaa 52  Q
    ||||||||||||||||| ||||| |||||||||||  |||||||||||||||    
T  22971948 cttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaa 22971999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22941577 - 22941537
Alignment:
Q  1 cttcttccagcaccaaaaggaatatactcaaaattatttcc 41  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  22941577 cttcttccagcaccaaatggaatgaactcaaaattatttcc 22941537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 22946404 - 22946452
Alignment:
Q  4 cttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaa 52  Q
    ||||| |||||||| ||||| |||||||||||  |||||||||||||||    
T  22946404 cttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaa 22946452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12636998 - 12637042
Alignment:
Q  1 cttcttccagcaccaaaaggaatatactcaaaattatttcctttg 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  12636998 cttcttcctgcaccaaaaggaatgtactcaaaattatttcctttg 12637042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12609902 - 12609946
Alignment:
Q  1 cttcttccagcaccaaaaggaatatactcaaaattatttcctttg 45  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||    
T  12609902 cttcttccagcaccaaagggaatgtactcaaaattattccctttg 12609946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15885965 - 15885922
Alignment:
Q  1 cttcttccagcaccaaaaggaatatactcaaaattatttccttt 44  Q
    |||||||||| |||||||||||| |||||||||||||| |||||    
T  15885965 cttcttccagaaccaaaaggaatgtactcaaaattattcccttt 15885922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6757 - 6722
Alignment:
Q  1 cttcttccagcaccaaaaggaatatactcaaaatta 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6757 cttcttccagcaccaaaaggaatgtactcaaaatta 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 55954999 - 55955067
Alignment:
Q  109 ggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatg 177  Q
    ||||||||| | | ||||||||||||||  |||||  |||| ||| ||||||||||||| |||||||||    
T  55954999 ggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatg 55955067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 55955105 - 55955137
Alignment:
Q  218 aaggtgggtgtaacctcattgtttctttgatca 250  Q
    ||||||||||||||||||| |||||||||||||    
T  55955105 aaggtgggtgtaacctcatggtttctttgatca 55955137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University