View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21283_high_8 (Length: 278)
Name: NF21283_high_8
Description: NF21283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21283_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 38186837 - 38186962
Alignment:
| Q |
137 |
ataacgttgtcatatttgatatcatgtgcgtgtcaaagacataataggataattgttatcttgtctatatcatatcaaatcctgctttatatcttacccc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38186837 |
ataacgttgtcatatttgatatcatgtgcgtgtcaaaggcataataggataattgttatcttgtctatatcatatcaaatcctgctttatatcttacccc |
38186936 |
T |
|
| Q |
237 |
tctcgatcatatcttagacaccaaac |
262 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
38186937 |
tctcgatcatatcttagacaccaaac |
38186962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38186731 - 38186808
Alignment:
| Q |
1 |
tgttataatatcttccaattcaacggtcaattttgtaataccattatgcgataaataattatgcgagataacatatta |
78 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
38186731 |
tgttataatacctttcaattcaacagtcaattttgtaataccattatgcgataaataattatccgagatggcatatta |
38186808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 30952149 - 30952206
Alignment:
| Q |
156 |
tatcatgtgcgtgtcaaagacataataggataattgttatcttgtctatatcatatca |
213 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| ||||||| | |||||||||||||| |
|
|
| T |
30952149 |
tatcatgtgcgcatcaaacacatgataggataaatgttatcatatctatatcatatca |
30952206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 14135239 - 14135157
Alignment:
| Q |
131 |
gataaaataacgttgtcatatttgatatcatgtgcgtgtcaaagacataataggataattgttatcttgtctatatcatatca |
213 |
Q |
| |
|
|||||||||| ||| || ||||| ||||||||||| |||||| |||| ||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
14135239 |
gataaaataatgttatcttatttattatcatgtgcgcgtcaaatacatgatatgataaatgttatcatgtctatatcatatca |
14135157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 33911660 - 33911609
Alignment:
| Q |
156 |
tatcatgtgcgtgtcaaagacataataggataattgttatcttgtctatatc |
207 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
33911660 |
tatcatgtgcgcatcaaacacataataggataagtgttatcatgtctatatc |
33911609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 23586060 - 23586117
Alignment:
| Q |
156 |
tatcatgtgcgtgtcaaagacataataggataattgttatcttgtctatatcatatca |
213 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| ||||||| |||||||||| ||||| |
|
|
| T |
23586060 |
tatcatgtgcgcatcaaacacatgataggataagtgttatcatgtctatatcctatca |
23586117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 33819482 - 33819401
Alignment:
| Q |
131 |
gataaaataacgttgtcatatttgatatcatgtgcgtgtcaaagacataataggataattgttatcttgtctatatcatatc |
212 |
Q |
| |
|
|||||||||| ||| | || ||| ||||||||||| |||||| |||| ||||||||| | ||||| ||| ||||||||||| |
|
|
| T |
33819482 |
gataaaataatgttattctacttgttatcatgtgcgcgtcaaacacatcataggataaatattatcatgtttatatcatatc |
33819401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University