View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21283_low_13 (Length: 235)
Name: NF21283_low_13
Description: NF21283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21283_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35800173 - 35799954
Alignment:
| Q |
1 |
tacttttgaattggttcaattggggnnnnnnnggttttaacaattggggtttttcaattaaagttgatagataactatgtttctgtttgtgttggatatt |
100 |
Q |
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| T |
35800173 |
tacttttgaattggttcaattggggtttttt-ggttttaacaattggggtttttcaattaaagttgatagataactatgtttctgtttgtgttggatatt |
35800075 |
T |
|
| Q |
101 |
ctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggctatggtttgctatttcgaattgaatatctagaaatcatctct |
200 |
Q |
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| T |
35800074 |
ctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcggtctacggtttgctatttcgaattgaatatctagaaatcatctct |
35799975 |
T |
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| Q |
201 |
tggtgaaacgttgttaagaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
35799974 |
tggtgaaacgttgttaagaaa |
35799954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 35786858 - 35786726
Alignment:
| Q |
63 |
gttgatagataactatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggcta-t |
161 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| | |||| | ||| | |
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| T |
35786858 |
gttgatagataactatgtttctgtttgtgttggatcttctgccaattatgttctgtaatcacttttgtctgtgctgtgctttgattacatgtcgtctatt |
35786759 |
T |
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| Q |
162 |
ggtttgctatttcgaattgaatatctagaaatc |
194 |
Q |
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| T |
35786758 |
gatatgctatttctaattgaatatctagtaatc |
35786726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 35761929 - 35761798
Alignment:
| Q |
64 |
ttgatagataactatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggctatgg |
163 |
Q |
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|||||||||||||||||||||||||||||||||| || ||| |||||||||||||| | | |||||| |||| |||||||||| ||||| | |||| | |
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| T |
35761929 |
ttgatagataactatgtttctgtttgtgttggatcttatgcagattatgttctgtattcacttttgtttgtgctgtgctttgatttcattttgtctatag |
35761830 |
T |
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| Q |
164 |
tt-tgctatttcgaattgaatatctagaaatc |
194 |
Q |
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|| || |||||| |||||||||||||| |||| |
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| T |
35761829 |
ttatgttatttctaattgaatatctagtaatc |
35761798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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