View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21283_low_14 (Length: 230)
Name: NF21283_low_14
Description: NF21283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21283_low_14 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 3515038 - 3515253
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3515038 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagcccccccatcgaccccccaacctaacaaaaacatctccctcaccgtcacac |
3515137 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3515138 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcccaaaacaaagtggtactcccatcacc |
3515237 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3515238 |
tactttcctgcctatg |
3515253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 9819419 - 9819629
Alignment:
| Q |
6 |
caactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacaccttta |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
9819419 |
caactcctcctcccatgcaaataatctccgtctccacctccaagcacccccatcgaccccccatcctaacaaaaacatcccccccaccgtcacaccttta |
9819518 |
T |
|
| Q |
106 |
ttttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacctactt |
205 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |
|
|
| T |
9819519 |
ttttctgacaactcataaagtctagagaaagccactgacagaggaacatttaacaaccaagaatcctcccaaaacaatgtggtactcccatcacctacct |
9819618 |
T |
|
| Q |
206 |
tcctgcctatg |
216 |
Q |
| |
|
||||| ||||| |
|
|
| T |
9819619 |
tcctgactatg |
9819629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 17153675 - 17153460
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||||||||||||||||||||| ||| || | |
|
|
| T |
17153675 |
tccaccaactcttcctcccatgcaaacaatctccgtctccatctccaagcacgcccttcgaccccccatcctaacaaaaacatctccctcatcgttactc |
17153576 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| || | ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
17153575 |
ctttattttccgacaattcaaaaagtctagaaaaggacactgccagcggaacatttaacaaccaggaatcctcccaaaacatggtggtactcccatcacc |
17153476 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
17153475 |
taccttcctgactatg |
17153460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 48547909 - 48548088
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||| || | ||| |||||| | |||||||||||||||||||||||||| || | |
|
|
| T |
48547909 |
ccaccaactcttcctcccacgcaaataatcgccgcctccaccttcacgctcccccatcaaccccccaccctaacaaaaacatctccctcaccgtgaccgc |
48548008 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaaca |
181 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||| ||| || | || ||||| ||| ||||| |||||| ||||||| |
|
|
| T |
48548009 |
tttaaattccgacaactcaaaaagtctagaaaaagacacagctaacgaaacatcagacatccaaggatcctcccaaaaca |
48548088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 8595612 - 8595819
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||| | || |||| |||||||||||| | || ||| |
|
|
| T |
8595612 |
ccaccaactcttcctcccaagcaaataatctccgcttccacctccaagcatccccatcaaccccccatcccaacataaacatctccctagcagtgacatt |
8595711 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacct |
201 |
Q |
| |
|
| | ||||| ||||| |||||||||||| | || | ||||| | |||||||| | ||||||||| |||||| ||||||| || ||||||||||| ||| |
|
|
| T |
8595712 |
tctgttttccgacaaatcaaaaagtctaaaaaacgaaactgctaacggaacatctgacaaccaagcatcctcccaaaacatggtagtactcccatctcct |
8595811 |
T |
|
| Q |
202 |
actttcct |
209 |
Q |
| |
|
|| ||||| |
|
|
| T |
8595812 |
accttcct |
8595819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23571489 - 23571443
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctcca |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23571489 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctcca |
23571443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 23603688 - 23603818
Alignment:
| Q |
73 |
aacaaaaacatctccctcaccgtcacacctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcct |
172 |
Q |
| |
|
|||||| |||||||||| ||| | ||| ||| ||||| ||||| ||||||||||||| || | |||||| | |||||||| || |||||||| ||||| |
|
|
| T |
23603688 |
aacaaacacatctcccttaccatgacatttttgttttccgacaatgcaaaaagtctagaaaacgacactgctaacggaacatctaccaaccaagcatcct |
23603787 |
T |
|
| Q |
173 |
cacaaaacaaagtggtactcccatcacctac |
203 |
Q |
| |
|
| |||||||| || |||||||||| ||||| |
|
|
| T |
23603788 |
cccaaaacaaggtattactcccatctcctac |
23603818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 42459171 - 42458992
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||| | |||||||||||||||||||||||||| | | |
|
|
| T |
42459171 |
ccaccaactcttcctcccacgcaaataatctcctcctccacctccacactcccccatccggcccccatcctaacaaaaacatctccctcaccgtggcctc |
42459072 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaaca |
181 |
Q |
| |
|
||||||| | ||||||| ||||||||| | ||| ||| || | |||||||| |||||||| | |||||| ||||||| |
|
|
| T |
42459071 |
tttatttgccgacaactgaaaaagtcttggaaaaaacaccgctaacggaacatcaaacaaccacggatcctcccaaaaca |
42458992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 26077606 - 26077391
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26077606 |
tccaccagctcttcctcccatgcaaataatctccgtctccacctccaagcccccccatcaaccccccaacctaacaaaaacatctccctcaccgtcacac |
26077507 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || |
|
|
| T |
26077506 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaaggatcctcccaaaacaaagtggtactcccatctcc |
26077407 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26077406 |
tactttcctgcctatg |
26077391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 18295264 - 18295049
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
18295264 |
tccaccaactctttctcccatgcaaataatctccgtctccacctccaggaacccccatcgaccccccatcctaacaaacacatctccctcaccgtcacac |
18295165 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
18295164 |
ctttattttctgacaactcaaaaagtctagagaaagtcactgccagcggaacatttaacaaccaagaatcctcccaaaacaatgtggtactcccatcacc |
18295065 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
18295064 |
tactttcctgactatg |
18295049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 2894646 - 2894772
Alignment:
| Q |
90 |
caccgtcacacctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggta |
189 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
2894646 |
caccatcactcctttattttctgacaattcataaagtctagagaaagccactgacagaggaacatttaacaaccaagagtcctcccaaaacaaagtagta |
2894745 |
T |
|
| Q |
190 |
ctcccatcacctactttcctgcctatg |
216 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
2894746 |
ctcccatcacctaccttcctgcctatg |
2894772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 28604754 - 28604559
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||| | ||| |||||| | |||||||||||||||||||||||||| || | |
|
|
| T |
28604754 |
ccaccaactcttcctcccatgcaaataatcgccgcctccacctccacgctcccccatcaaccccccatcctaacaaaaacatctccctcaccgtaacctc |
28604655 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatc |
197 |
Q |
| |
|
|||| ||| |||||| ||||||||||||| |||| ||| | | |||||||| | |||||||| |||||| ||||| | |||||||| |||||| |
|
|
| T |
28604654 |
tttaaattccgacaacgcaaaaagtctagaaaaagacacagttaacggaacatcaagcaaccaaggatcctcccaaaatatagtggtacacccatc |
28604559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 7218215 - 7218010
Alignment:
| Q |
4 |
accaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacctt |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| ||||| | ||| ||||| | ||||||| ||||||||||| |||||| | ||| |
|
|
| T |
7218215 |
accaactcttcctcccacgcaaataatctcctcctccatctccacgctcccccatccgccccccatcctaacacaaacatctcccacaccgtggcctctt |
7218116 |
T |
|
| Q |
104 |
tattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacctac |
203 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||| | | || | || | |||| | || ||||| |||||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
7218115 |
tattttccgacaattcaaaaagtctaggaaaaagctccgctaacgaaccattaaccacccaaggatcctcccaaaacaaagtggcactcccatcgcctac |
7218016 |
T |
|
| Q |
204 |
tttcct |
209 |
Q |
| |
|
||||| |
|
|
| T |
7218015 |
cttcct |
7218010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 2894592 - 2894639
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaag |
49 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2894592 |
ccaccaactcctcctcccatgcaaataatatccgtctccacctccaag |
2894639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 51873039 - 51873254
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
51873039 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagcacccccatcgaccccccatcctaacaaaaacatctccctcaccgtcacac |
51873138 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
51873139 |
ctttattttctgacaactcaaaaagtctagagaaagttactcctagcggaacatttaacaaccaagaatcctcccaaaacaatgtggtactcccatcacc |
51873238 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
51873239 |
tactttcctgactatg |
51873254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 36279071 - 36278856
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
36279071 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagcacccccatcgaccccccatcctaacaaaaacatctccctcaccgttacac |
36278972 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |
|
|
| T |
36278971 |
ctttattttctgacaactcaaaaagtctagagaaagacactgccagcggaacatttaacaaccaagaatcctcctaaaacatggtggtactcccatctcc |
36278872 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
36278871 |
taccttcctgactatg |
36278856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 23158018 - 23157803
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||| |||| |
|
|
| T |
23158018 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagcacccccatcgaccccccatcctaacaaaaacatccccctcaccgttacac |
23157919 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||| || |
|
|
| T |
23157918 |
ctttattttctgacaactcaaaaagtctagagaaagacactgccagcggaacatctaacaaccaagaatcctcctaaaacatggtggtactcccatctcc |
23157819 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
23157818 |
taccttcctgactatg |
23157803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 15648934 - 15648726
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| ||| ||||||| ||| ||||| | ||||| |||||||||||||||||||| ||||| |
|
|
| T |
15648934 |
ccaccaactcttcctcccaagcaaacaatctccgtcgccaactccaagcacccccatcagccccccagcctaataaaaacatctccctcaccgttacacc |
15648835 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacct |
201 |
Q |
| |
|
||||||||| ||||| |||||||||| ||| ||||| || |||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
15648834 |
tttattttccgacaaatcaaaaagtcgagaaaaagctacagccaacggaacatttaacaaccagtaatcctcccaaaacatggtggtactcccatcacct |
15648735 |
T |
|
| Q |
202 |
actttcctg |
210 |
Q |
| |
|
|| |||||| |
|
|
| T |
15648734 |
accttcctg |
15648726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 17826648 - 17826441
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||| | ||| ||||| | | |||| ||||||||||||||| || ||| |
|
|
| T |
17826648 |
ccaccaactcttcctcccatgcaaataatttccgcctccacctccacgcatccccatcagccccccactccaacataaacatctccctcactgtgacatt |
17826549 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacct |
201 |
Q |
| |
|
||| ||||| |||||||||||||||||||| || | ||| || | | |||||| ||||||||||| |||||| ||||||| || || |||||||| ||| |
|
|
| T |
17826548 |
tttgttttccgacaactcaaaaagtctagaaaacgacacagctaacagaacatctaacaaccaaggatcctcccaaaacatggtagtgctcccatctcct |
17826449 |
T |
|
| Q |
202 |
actttcct |
209 |
Q |
| |
|
|| ||||| |
|
|
| T |
17826448 |
accttcct |
17826441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 22340934 - 22341141
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||| || |||||||| |||||||||||||| ||||||||||| | |||| | || | || |||| | |||||||||| || || ||| |
|
|
| T |
22340934 |
ccaccaattcctcctcccaagcaaataatctccgcctccacctccacgcacccccatcggcttcccaccccaacagacacatctcccttactgtgacatt |
22341033 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacct |
201 |
Q |
| |
|
||| ||||| |||||||||||||||||||| || | |||||| | |||||||| ||||||||||| |||||| |||||||| || |||||||||| ||| |
|
|
| T |
22341034 |
tttgttttccgacaactcaaaaagtctagaaaacgacactgctaacggaacatctaacaaccaagcatcctcccaaaacaaggtattactcccatctcct |
22341133 |
T |
|
| Q |
202 |
actttcct |
209 |
Q |
| |
|
|| ||||| |
|
|
| T |
22341134 |
accttcct |
22341141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 29123234 - 29123091
Alignment:
| Q |
73 |
aacaaaaacatctccctcaccgtcacacctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcct |
172 |
Q |
| |
|
|||||| |||||||||| || || ||| ||| ||||| |||||||||||||||||||| || | |||||| | |||||||| || |||||||| ||||| |
|
|
| T |
29123234 |
aacaaacacatctcccttactgtgacatttttgttttccgacaactcaaaaagtctagaaaacgacactgctaacggaacatctaccaaccaagcatcct |
29123135 |
T |
|
| Q |
173 |
cacaaaacaaagtggtactcccatcacctactttcctgcctatg |
216 |
Q |
| |
|
| |||||||| || |||||||||| ||||| |||||| ||||| |
|
|
| T |
29123134 |
cccaaaacaaggtattactcccatctcctaccttcctgactatg |
29123091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 3621857 - 3622058
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataat------ctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgt |
95 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||| | ||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
3621857 |
ccaccaactcttcctcccatgcaaataattgccgcctccacctccacctccacgctcccccatcaaccccccatcctaacaaaaacatctccctcaccgt |
3621956 |
T |
|
| Q |
96 |
cacacctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactccca |
195 |
Q |
| |
|
|| ||||| ||| ||||| ||||||||||||| |||| ||| || | |||||||| | |||||||| |||||| ||||||| ||||||| |||| |
|
|
| T |
3621957 |
aacctctttaaattccaacaacgcaaaaagtctagaaaaagacacagctaacggaacatcaagcaaccaaggatcctcccaaaacatggtggtacaccca |
3622056 |
T |
|
| Q |
196 |
tc |
197 |
Q |
| |
|
|| |
|
|
| T |
3622057 |
tc |
3622058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 4303069 - 4303024
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctcca |
47 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
4303069 |
ccaccaactcttcctcccaagcgaataatctccgcctccacctcca |
4303024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30276240 - 30276455
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
30276240 |
tccaccaactcttcctcccatggaaataatctccgtctccacctccaagcgcccccatcgaccccccatcctaacaaaaacatctccctcaccgtaacac |
30276339 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30276340 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctttcaaaacatggtggtactcccatcacc |
30276439 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
30276440 |
taccttcctgactatg |
30276455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 21964947 - 21965162
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||| ||| ||||||| ||| ||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
21964947 |
tccaccaactcttcctcccaagcaaacagtctccgtcgccaactccaagcgcccccatcagccccccaacctaataaaaacatctccctcaccgatacac |
21965046 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||| ||||||| |||||||||||||||||| | |||||| |||||||| ||||||||||||||||| |
|
|
| T |
21965047 |
ctttattttccgacaaatcaaaaagtctagaaaaagctactgccaacggaacatttaacaaccagggatcctcccaaaacaaggtggtactcccatcacc |
21965146 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
21965147 |
taccttcctgactatg |
21965162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 38938826 - 38938869
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctc |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38938826 |
ccaccaactcttcctcccatgcaaataatctccgcctccacctc |
38938869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 12121940 - 12122155
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
12121940 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagcacccccatcgaccccccatcttaacaaaaacatctccctcaccgtcacac |
12122039 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |
|
|
| T |
12122040 |
ctttattttctgacaactcaaaaagtctagagaaagttacttctagcggaacatttaacaaccaagaatcctcccaaaacaatgtggtactcccatcccc |
12122139 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
12122140 |
tactttcctgactatg |
12122155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 24820052 - 24820266
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| ||||| |||||||||||| |
|
|
| T |
24820052 |
ccaccaactcctcctcccatgcaaataatctccgtctccacctccaagcacccccatcgaccccccatcctaacaaaaacacctcccccaccgtcacacc |
24820151 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacct |
201 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
24820152 |
tttattttctgacaactcataaagtctagagaaagccactgccaggggaacatttaacaaccaagaatcctcccaaaacaatgtggtactcccatcacct |
24820251 |
T |
|
| Q |
202 |
actttcctgcctatg |
216 |
Q |
| |
|
|| |||||| ||||| |
|
|
| T |
24820252 |
accttcctgactatg |
24820266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 9402998 - 9402783
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
||||| |||||||||||||| ||||| | |||||||| ||| ||||||| ||| |||||| ||||||| |||||||||||||||||| | |||| |
|
|
| T |
9402998 |
tccactaactcttcctcccaagcaaacagtctccgtcgccaactccaagcacccccatcaaccccccaacctaataaaaacatctccctcaccattacac |
9402899 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
9402898 |
ctttattttccgacaaatcaaaaagtctagaaaaagctactgccaacggaacatttaacaaccaggaatcctcccaaaacatggtggtactcccatcacc |
9402799 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
9402798 |
taccttcctgactatg |
9402783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 587138 - 587334
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| | |||| ||||| | || |||||||||||||||||||||| |||| |
|
|
| T |
587138 |
tccaccaactcttcctcccaagcaaataatcttcgtctccacctccatgctcccccatcggccccccatcccaacaaaaacatctccctcaccgaaacac |
587237 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatc |
197 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| |||||||| |||||| ||||| | ||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
587238 |
ctttattttctgccaactcaaaaagtctagaaaaagacactgccaacggaacgtttaaaagccaaggatcctcccaaaacaaggtggtactcccatc |
587334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 34982202 - 34982410
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| ||| ||||||| ||| ||||| | ||||| |||||||||||||||||||| ||||| |
|
|
| T |
34982202 |
ccaccaactcttcctcccaagcaaacaatctccgtcgccaactccaagcacccccatcagccccccagcctaataaaaacatctccctcaccgttacacc |
34982301 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacct |
201 |
Q |
| |
|
||||||||| ||||| |||||||||| ||| ||||| || |||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
34982302 |
tttattttccgacaaatcaaaaagtcgagaaaaagctacagccaacggaacatttaacaaccagaaatcctcccaaaacatggtggtactcccatcacct |
34982401 |
T |
|
| Q |
202 |
actttcctg |
210 |
Q |
| |
|
|| |||||| |
|
|
| T |
34982402 |
accttcctg |
34982410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 40891631 - 40891436
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| | |||| ||||| | || |||||||||||||||||||| || ||| | |
|
|
| T |
40891631 |
ccaccaactcttcctcccacgcaaataatctccgcctccacctccacgcacccccatcggccccccaccccaacaaaaacatctccctcactgtgacatc |
40891532 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatc |
197 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||| |||| |
|
|
| T |
40891531 |
tttattttccgacaactcaaaaagtctagaaaaagacactgccaacggaacatctaacaaccaaggatcctcccaaaacatggtggtactctcatc |
40891436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 37075458 - 37075243
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||| ||| ||||||| || ||||| ||||||| | |||||||||||||||||| |||| |
|
|
| T |
37075458 |
tccaccaactcttcctcccaagcaaacagtctccgtcgccaactccaagcacccccgtcagccccccaacctaatacaaacatctccctcaccgttacac |
37075359 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| ||||| || |||| | |||||||||||||||| |||||||| ||||||| |||||||||||||| || |
|
|
| T |
37075358 |
ctttattttccgacaaatcaaaaagcctagaaaaagctacagccaacagaacatttaacaaccaggaatcctcccaaaacatggtggtactcccatcgcc |
37075259 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
37075258 |
taccttcctgactatg |
37075243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 20705359 - 20705181
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| |||||||| | || ||||||||||| | ||| |||||| | |||||||||||||||||||||||||| || | |
|
|
| T |
20705359 |
ccaccaactcttcctcccaagcaaataaacgcctcctccacctccacgctcccccatcaaccccccaccctaacaaaaacatctccctcaccgtaacctc |
20705260 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaac |
180 |
Q |
| |
|
| | ||| |||||| ||||||||||||| |||| |||||| | |||||||| | |||||||| |||||| |||||| |
|
|
| T |
20705259 |
tcgaaattccgacaacccaaaaagtctagaaaaagacactgctaacggaacatcaagcaaccaaggatcctcccaaaac |
20705181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 20873403 - 20873225
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| |||||||| | || ||||||||||| | ||| |||||| | |||||||||||||||||||||||||| || | |
|
|
| T |
20873403 |
ccaccaactcttcctcccaagcaaataaacgcctcctccacctccacgctcccccatcaaccccccaccctaacaaaaacatctccctcaccgtaacctc |
20873304 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaac |
180 |
Q |
| |
|
| | ||| |||||| ||||||||||||| |||| |||||| | |||||||| | |||||||| |||||| |||||| |
|
|
| T |
20873303 |
tcgaaattccgacaacccaaaaagtctagaaaaagacactgctaacggaacatcaagcaaccaaggatcctcccaaaac |
20873225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 10004286 - 10004500
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||| ||||| |||||| |
|
|
| T |
10004286 |
ccaccaactcctcctcccatgcaaataatctccgtctccacctccaagcacccccatcgaccccccatcctagcaaaaacatctcccccaccgacacacc |
10004385 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacct |
201 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
10004386 |
tttattttctgacaactcataaagtctagagaaagccactgccaggggaacatttaacaaccaagaatcctcccaaaacaatgtggtacacccatcacct |
10004485 |
T |
|
| Q |
202 |
actttcctgcctatg |
216 |
Q |
| |
|
|| |||||| ||||| |
|
|
| T |
10004486 |
accttcctgactatg |
10004500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 27030311 - 27030521
Alignment:
| Q |
6 |
caactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacaccttta |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
27030311 |
caactcctcctcccatgcaaataatctccgtctccacctccaagcacccccattgaccccccatcctaacaaaaacatctcccccaccgacacaccttta |
27030410 |
T |
|
| Q |
106 |
ttttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacctactt |
205 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |
|
|
| T |
27030411 |
aattctgacaactcataaagtctagaaaaagccacggccagggggacatttaacaaccaagaatcctcccaaaacaatgtggtactcccatcacctacct |
27030510 |
T |
|
| Q |
206 |
tcctgcctatg |
216 |
Q |
| |
|
||||| ||||| |
|
|
| T |
27030511 |
tcctgactatg |
27030521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 49370126 - 49370329
Alignment:
| Q |
6 |
caactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacaccttta |
105 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||| | ||| ||||| | || |||| |||||||||||| || || ||| |||| |
|
|
| T |
49370126 |
caactcttcctcccaagcgaataatctccgcctccacctccacgcatccccatcagccccccatcccaacagaaacatctcccttactgtgacattttta |
49370225 |
T |
|
| Q |
106 |
ttttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacctactt |
205 |
Q |
| |
|
||||| || ||||||||||||||||| || | | |||| | |||||||| ||||||||||| ||||| ||||||| ||| ||||||||||| ||||| | |
|
|
| T |
49370226 |
ttttccgataactcaaaaagtctagaaaacgacgctgctaacggaacatctaacaaccaagcatccttccaaaacatagtagtactcccatctcctacct |
49370325 |
T |
|
| Q |
206 |
tcct |
209 |
Q |
| |
|
|||| |
|
|
| T |
49370326 |
tcct |
49370329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41342676 - 41342630
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctcca |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41342676 |
tccaccaactcttcctcccatgcaaataatctctgtctccacctcca |
41342630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 25392971 - 25393016
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctcca |
47 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||| ||||||||| |
|
|
| T |
25392971 |
ccaccaactcctcctcccatgcaaacaacctccgtcaccacctcca |
25393016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 6678446 - 6678231
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||| ||| ||||||| ||| ||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
6678446 |
tccaccaactcttcctcccaagcaaacagtctccgtcgccaactccaagcacccccatcagccccccaacctaataaaaacatctccctcaccgttacac |
6678347 |
T |
|
| Q |
101 |
ctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacc |
200 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||| || |||| |||||||||||||||||| |||||||| ||||||| |||||||||||||| || |
|
|
| T |
6678346 |
ctttattttccgacaaatcaaaaagtctagaaaaagctacagccaacggaacatttaacaaccaggaatcctcccaaaacatggtggtactcccatcgcc |
6678247 |
T |
|
| Q |
201 |
tactttcctgcctatg |
216 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
6678246 |
taccttcctgactatg |
6678231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 11266380 - 11266587
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | |||||||||| | | ||||| | || |||||||||||||||||||| || || || |
|
|
| T |
11266380 |
ccaccaactcttcctcccaagcaaataatctccttttccacctccacacacctccagcagccccccaccccaacaaaaacatctccctcactgtgacccc |
11266479 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacct |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| || | ||||||| ||||||||||| |||||| ||||||| ||||||| |||||| ||| |
|
|
| T |
11266480 |
tttattttccgacaactcaaaaagtctagaaaaagatgtagctaaaggaacatctaacaaccaaggatcctcccaaaacatggtggtacgcccatctcct |
11266579 |
T |
|
| Q |
202 |
actttcct |
209 |
Q |
| |
|
|| ||||| |
|
|
| T |
11266580 |
accttcct |
11266587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 27892127 - 27892238
Alignment:
| Q |
70 |
cctaacaaaaacatctccctcaccgtcacacctttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaat |
169 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||| |||||| ||||||||||||| |||| ||| || | |||||||| | || ||||| || |
|
|
| T |
27892127 |
cctaacaaaaacatctccctcaccgtgacctctttaaattccgacaacgcaaaaagtctagaaaaagacacagctaacggaacatcaagcagccaaggat |
27892226 |
T |
|
| Q |
170 |
cctcacaaaaca |
181 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
27892227 |
cctcccaaaaca |
27892238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5824837 - 5824789
Alignment:
| Q |
1 |
tccaccaactcttcctcccatgcaaataatctccgtctccacctccaag |
49 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||| ||| ||||||| |
|
|
| T |
5824837 |
tccaccaactcttcctcccaagcaaacagtctccgtcgccaactccaag |
5824789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 38932133 - 38932169
Alignment:
| Q |
11 |
cttcctcccatgcaaataatctccgtctccacctcca |
47 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
38932133 |
cttcctcccacgcaaataatctccgcctccacctcca |
38932169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 74653 - 74848
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| | |||| ||||| | || |||||||||||||||||||| || ||| | |
|
|
| T |
74653 |
ccaccaactcttcctcccacgcaaataatctccgcctccacctccacgcacccccatcggccccccaccccaacaaaaacatctccctcactgtgacatc |
74752 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatc |
197 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||| |||| |
|
|
| T |
74753 |
tttattttccgacaactcaaaaagtctagaaaaagacactgccaacggaacatctaacaaccaaggatcctcccaaaacatggtggtactctcatc |
74848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 224593 - 224386
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| | ||||| | ||| |||| | ||||||| ||||||||||| |||||| | | |
|
|
| T |
224593 |
ccaccaactcttcctcccacgcaaataatctcctcctctatctccacgctcccccatccgtcccccatcctaacacaaacatctcccacaccgtggcctc |
224494 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtctagagaaagccactgccagcggaacatttaacaaccaagaatcctcacaaaacaaagtggtactcccatcacct |
201 |
Q |
| |
|
|||| |||| ||||| ||||||||||||| ||| | | || | || | |||| |||||||||| |||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
224493 |
tttagtttccgacaattcaaaaagtctaggaaaaagctccgctaacgaaccattaaacaaccaaggatcctcccaaaaaaaagtggtactcccatcgcct |
224394 |
T |
|
| Q |
202 |
actttcct |
209 |
Q |
| |
|
|| ||||| |
|
|
| T |
224393 |
accttcct |
224386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 58263 - 58138
Alignment:
| Q |
2 |
ccaccaactcttcctcccatgcaaataatctccgtctccacctccaagnnnnnnnatcgaccccctaacctaacaaaaacatctccctcaccgtcacacc |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||| | | ||| | |||| | ||||||||||||||||| ||||| || || |
|
|
| T |
58263 |
ccaccaactcttcctcccaaccaaataatctccgcctccacctcgacgctcccccatcaagcccccaccctaacaaaaacatctcactcactgtgaccta |
58164 |
T |
|
| Q |
102 |
tttattttctgacaactcaaaaagtc |
127 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
58163 |
tttattttccgacaactcaaaaagtc |
58138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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