View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21283_low_6 (Length: 361)

Name: NF21283_low_6
Description: NF21283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21283_low_6
NF21283_low_6
[»] scaffold0024 (1 HSPs)
scaffold0024 (18-356)||(13557-13895)
[»] scaffold1049 (1 HSPs)
scaffold1049 (186-238)||(413-465)
[»] chr7 (3 HSPs)
chr7 (134-238)||(19742956-19743060)
chr7 (186-238)||(26083297-26083349)
chr7 (186-238)||(26107084-26107136)
[»] chr6 (2 HSPs)
chr6 (186-238)||(4502303-4502355)
chr6 (186-238)||(15825855-15825907)
[»] chr5 (2 HSPs)
chr5 (186-238)||(548886-548938)
chr5 (186-238)||(30279298-30279350)


Alignment Details
Target: scaffold0024 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 13557 - 13895
Alignment:
Q  18 gtttcgaaacctcagcaagttcactatcaggctgctattagagttttacaatatctgaaaactgcccctaccaaaggattattctactcagcaacttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13557 gtttcgaaacctcagcaagttcactatcaggctgctattagagttttacaatatctgaaaactgcccctgccaaaggattattctactcagcaacttcta 13656  T
Q  118 atttgaaactttctggttttgcagattctgattgggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcat 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13657 atttgaaactttctagttttgcagattctgattgggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcat 13756  T
Q  218 ttcatggaaatccaagaagcagtcaatcgtctccaaatcaagctcagaagctgaatatcgtgcattagcaagccttacatgtgaactgcaatggctaatg 317  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13757 ttcatggaaatccaagaagcagtcgatcgtctccaaatcaagctcagaagctgaatatcgcgcattagcaagccttacatgtgaactgcaatggctaatg 13856  T
Q  318 tacctctttaaagatctgcacctctctttctctgctcct 356  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  13857 tacctctttaaagatctgcacctctctttctcttctcct 13895  T

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Target: scaffold1049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 465 - 413
Alignment:
Q  186 ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca 238  Q
    |||| ||||||||||||||| ||||| ||||| |||||||| || ||||||||    
T  465 ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca 413  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 19742956 - 19743060
Alignment:
Q  134 ttttgcagattctgattgggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcatttcatggaaatccaag 233  Q
    |||||| ||||||||||||||||  ||||||  ||| || || ||| | || || | ||||||||| ||||| |||||| | ||||| ||||| ||||||    
T  19742956 ttttgctgattctgattgggcaaggtgtcctgaaactagaaagtctattacaggattttgtgtgttacttggttcttctttaatttcttggaagtccaag 19743055  T
Q  234 aagca 238  Q
    |||||    
T  19743056 aagca 19743060  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 26083349 - 26083297
Alignment:
Q  186 ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca 238  Q
    |||| ||||||||||||||| ||||| ||||| |||||||| || ||||||||    
T  26083349 ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca 26083297  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 26107136 - 26107084
Alignment:
Q  186 ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca 238  Q
    |||| ||||||||||||||| ||||| ||||| |||||||| || ||||||||    
T  26107136 ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca 26107084  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 4502303 - 4502355
Alignment:
Q  186 ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca 238  Q
    |||| ||||||||||||||| ||||| ||||| |||||||| || ||||||||    
T  4502303 ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca 4502355  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 15825855 - 15825907
Alignment:
Q  186 ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca 238  Q
    |||| ||||||||||||||| ||||| ||||| |||||||| || ||||||||    
T  15825855 ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca 15825907  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 548938 - 548886
Alignment:
Q  186 ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca 238  Q
    |||| ||||||||||||||| ||||| ||||| |||||||| || ||||||||    
T  548938 ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca 548886  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 30279350 - 30279298
Alignment:
Q  186 ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca 238  Q
    |||| ||||||||||||||| ||||| ||||| |||||||| || ||||||||    
T  30279350 ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca 30279298  T

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