View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21283_low_9 (Length: 272)

Name: NF21283_low_9
Description: NF21283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21283_low_9
NF21283_low_9
[»] chr1 (2 HSPs)
chr1 (2-266)||(38186433-38186697)
chr1 (2-52)||(29142019-29142068)
[»] chr2 (1 HSPs)
chr2 (2-52)||(29868971-29869021)
[»] chr7 (3 HSPs)
chr7 (2-50)||(28117312-28117360)
chr7 (2-52)||(9222701-9222751)
chr7 (2-52)||(30284318-30284368)
[»] chr3 (3 HSPs)
chr3 (2-52)||(22850931-22850981)
chr3 (5-50)||(43263802-43263847)
chr3 (18-50)||(41799980-41800012)
[»] chr6 (1 HSPs)
chr6 (2-52)||(6562252-6562302)
[»] chr5 (3 HSPs)
chr5 (2-52)||(11713197-11713247)
chr5 (18-52)||(14117397-14117431)
chr5 (3-52)||(3920724-3920773)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 38186697 - 38186433
Alignment:
Q  2 aaaagttcataagacattaattttgatgtatttcattgacatatcaaatgacattatttatattataatatctttcaattgaaccatctattttgtaata 101  Q
    |||| |||||||||  ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38186697 aaaaattcataagatgttaattttggtgtatctcattaacatatcaaatgacattatttatattataatatctttcaattgaaccatctattttgtaata 38186598  T
Q  102 cactaaggtgtcaaagtttaaatgacactaaatcatatccgttggtttcaattaaattagaggctcaaaattattcgattaaattgtcacgtgaccatat 201  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38186597 cactaaggtgtcaaagtttaaatgacactaaatcatatctgttgatttcaattaaattagaggctcaaaattattccattaaattgtcacgtgaccatat 38186498  T
Q  202 gctacgctttccgtgttcttcccttgtgtgttttctttctgtttgacatgcttctcttcttctca 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38186497 gctacgctttccgtgttcttcccttgtgtgttttctttctgtttgacatgcttctcttcgtctca 38186433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 29142068 - 29142019
Alignment:
Q  2 aaaagttcataagacattaattttgatgtatttcattgacatatcaaatga 52  Q
    ||||||| |||||||||||||||| |||||| |||||||||||| ||||||    
T  29142068 aaaagttaataagacattaatttt-atgtatatcattgacatattaaatga 29142019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 29869021 - 29868971
Alignment:
Q  2 aaaagttcataagacattaattttgatgtatttcattgacatatcaaatga 52  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  29869021 aaaagttcataagacattaattttgatatatctcattgaaatatcaaatga 29868971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 28117312 - 28117360
Alignment:
Q  2 aaaagttcataagacattaattttgatgtatttcattgacatatcaaat 50  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  28117312 aaaagttcattagacgttaattttgatgcatttcattgacatatcaaat 28117360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 9222701 - 9222751
Alignment:
Q  2 aaaagttcataagacattaattttgatgtatttcattgacatatcaaatga 52  Q
    ||||||||||||||||||| ||||||| |||||| || |||| ||||||||    
T  9222701 aaaagttcataagacattagttttgatctatttcgttaacatgtcaaatga 9222751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 30284368 - 30284318
Alignment:
Q  2 aaaagttcataagacattaattttgatgtatttcattgacatatcaaatga 52  Q
    ||||||||||||||| |||||||| | |||||| ||| |||||||||||||    
T  30284368 aaaagttcataagactttaattttaacgtatttaattaacatatcaaatga 30284318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 22850981 - 22850931
Alignment:
Q  2 aaaagttcataagacattaattttgatgtatttcattgacatatcaaatga 52  Q
    |||||||||||||||||||||||||||| || || ||||||| ||||||||    
T  22850981 aaaagttcataagacattaattttgatgcatctcgttgacatgtcaaatga 22850931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 43263802 - 43263847
Alignment:
Q  5 agttcataagacattaattttgatgtatttcattgacatatcaaat 50  Q
    |||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  43263802 agttcataagacgttaattttgatttatctcattgccatatcaaat 43263847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 41799980 - 41800012
Alignment:
Q  18 ttaattttgatgtatttcattgacatatcaaat 50  Q
    ||||||||||||||||| |||||||||||||||    
T  41799980 ttaattttgatgtatttaattgacatatcaaat 41800012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 6562302 - 6562252
Alignment:
Q  2 aaaagttcataagacattaattttgatgtatttcattgacatatcaaatga 52  Q
    |||||||||||||||||||||| ||||| |  ||||||||||| |||||||    
T  6562302 aaaagttcataagacattaattctgatgcaactcattgacataccaaatga 6562252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 11713247 - 11713197
Alignment:
Q  2 aaaagttcataagacattaattttgatgtatttcattgacatatcaaatga 52  Q
    ||||||||||||||| |||||||||| |||| | |||||||||||| ||||    
T  11713247 aaaagttcataagacgttaattttgaggtatctaattgacatatcatatga 11713197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 14117397 - 14117431
Alignment:
Q  18 ttaattttgatgtatttcattgacatatcaaatga 52  Q
    ||||||||||||||| |||||||||||||||||||    
T  14117397 ttaattttgatgtatgtcattgacatatcaaatga 14117431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 3920724 - 3920773
Alignment:
Q  3 aaagttcataagacattaattttgatgtatttcattgacatatcaaatga 52  Q
    |||||||||||||  ||  ||||||||||| |||||||||||||||||||    
T  3920724 aaagttcataagaagtttcttttgatgtatgtcattgacatatcaaatga 3920773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University