View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21284_high_10 (Length: 536)

Name: NF21284_high_10
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21284_high_10
NF21284_high_10
[»] chr1 (10 HSPs)
chr1 (119-523)||(2595140-2595525)
chr1 (132-389)||(52022033-52022291)
chr1 (213-386)||(6139804-6139976)
chr1 (236-387)||(6138206-6138356)
chr1 (221-389)||(5397341-5397504)
chr1 (245-351)||(43834975-43835081)
chr1 (18-74)||(2595549-2595610)
chr1 (132-197)||(6138118-6138179)
chr1 (320-384)||(43635710-43635773)
chr1 (132-164)||(43834909-43834941)
[»] chr8 (5 HSPs)
chr8 (132-389)||(7278010-7278263)
chr8 (133-350)||(392305-392521)
chr8 (187-389)||(7284562-7284764)
chr8 (132-281)||(3581328-3581475)
chr8 (313-389)||(3581496-3581572)
[»] chr7 (6 HSPs)
chr7 (132-389)||(15588612-15588865)
chr7 (132-389)||(5448820-5449075)
chr7 (132-389)||(5439810-5440065)
chr7 (129-282)||(15589853-15590003)
chr7 (246-389)||(5438815-5438959)
chr7 (246-389)||(5447825-5447969)
[»] chr6 (6 HSPs)
chr6 (134-389)||(32341995-32342247)
chr6 (132-352)||(14763823-14764042)
chr6 (132-389)||(14766364-14766619)
chr6 (202-380)||(21118396-21118574)
chr6 (213-343)||(21118715-21118845)
chr6 (163-248)||(20726704-20726789)
[»] chr5 (9 HSPs)
chr5 (132-389)||(35429864-35430119)
chr5 (132-344)||(18009106-18009314)
chr5 (133-389)||(30921577-30921826)
chr5 (134-343)||(7400471-7400678)
chr5 (163-389)||(41340973-41341201)
chr5 (132-286)||(7658881-7659032)
chr5 (132-389)||(35428281-35428537)
chr5 (134-195)||(13661627-13661684)
chr5 (315-360)||(13661995-13662040)
[»] chr4 (7 HSPs)
chr4 (137-389)||(41848302-41848551)
chr4 (130-389)||(31322483-31322739)
chr4 (228-389)||(14508729-14508890)
chr4 (132-285)||(45676679-45676830)
chr4 (132-384)||(31327111-31327360)
chr4 (220-370)||(10549993-10550141)
chr4 (131-197)||(10550139-10550201)
[»] chr2 (4 HSPs)
chr2 (132-385)||(31073643-31073894)
chr2 (130-342)||(4660113-4660320)
chr2 (132-285)||(33301074-33301223)
chr2 (220-389)||(20594612-20594781)
[»] chr3 (7 HSPs)
chr3 (132-370)||(38183082-38183319)
chr3 (132-388)||(3371317-3371573)
chr3 (131-389)||(1026711-1026961)
chr3 (222-389)||(17731024-17731191)
chr3 (222-389)||(19032255-19032422)
chr3 (161-337)||(49582540-49582716)
chr3 (132-190)||(3372278-3372332)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 119 - 523
Target Start/End: Complemental strand, 2595525 - 2595140
Alignment:
Q  119 gtggagttggaagtgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2595525 gtggagttggaagtgttgggtttgattgtcaagtttcttatataaa----gaaggaggttaaaaagtattagctattggaggagtcctacatcacttagt 2595430  T
Q  219 gtggtgaagcaaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagt 318  Q
    ||||||||| ||||||||||||||||||||||||| ||  ||||||||||||||||||||||||  ||| |||||| ||| | ||| |||||||||||||    
T  2595429 gtggtgaagtaaggggaagacctagactatatattagacttaggttctttgtttttagatgcac--gtcagtagtgctttgagcttatatgtgacttagt 2595332  T
Q  319 ttaaatatttattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgttatnnnnnnnttcacataataatttcacat 418  Q
    |||||||||| |||||| ||| ||| |||||| | |  ||||| ||||||||||||||||||||||||||| |              || || |||||||    
T  2595331 ttaaatatttgttttgtaagaatgtggttgtattggagcattaaggtgagagtgatagaagtctatgtgttgta-------------aaaaaattcacat 2595245  T
Q  419 agtaatatttggtggcaatagtttttggggaagcattaaggcgtgccttgtctttttatgagtggtttgtcagtccaatagattgtttgactaggaaaat 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2595244 agtaatatttggtggcaatagtttttggggaagcattaaggcgtgccttgtctttttatgagtggtttgtcaatccaatagattgtttgactaggaaaat 2595145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 132 - 389
Target Start/End: Original strand, 52022033 - 52022291
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagc 228  Q
    ||||||||||||||||||||||||||     ||||| ||||||||||||||| |||||| |||||| |     |||| ||||  |||||| | ||||||     
T  52022033 tgttgggtttgattgtcaagtttcttg----aataaggaaggaggttaaaaa-tattagttattggtgattatgtcccacattgcttagtttagtgaagt 52022127  T
Q  229 aaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattt 328  Q
    |||||||||||| || |||||||||| | |||| |||||||||||||||||||||||||  |||   ||||| ||  ||| |||||||||||||||||||    
T  52022128 aaggggaagaccaaggctatatattgaacctagtttctttgtttttagatgcaccagtcattagcactttaagctcatatctgacttagtttaaatattt 52022227  T
Q  329 attttgtgagagtgttgttgtac---taggacattagggtgagagtgatagaagtctatgtgtt 389  Q
     |||||||||||||| ||||| |     || |||| || ||||||||| |||||||||||||||    
T  52022228 gttttgtgagagtgtggttgtgcgtgccgggcattgggatgagagtgagagaagtctatgtgtt 52022291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 213 - 386
Target Start/End: Original strand, 6139804 - 6139976
Alignment:
Q  213 cttagtgtggtgaagcaaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtga 312  Q
    |||||| | ||||||||||||||||||| || |||||||||| |  ||| ||||||||||||||||||||| |||  ||    ||||| ||| ||| | |    
T  6139804 cttagtttagtgaagcaaggggaagaccaaggctatatattgaacatagtttctttgtttttagatgcaccggtcaataacactttaagcttatatctaa 6139903  T
Q  313 cttagtttaaatatttattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgt 386  Q
    ||||||||||||||||  ||||||||||||| | |||||| |||||||| ||||||||| | ||||||||||||    
T  6139904 cttagtttaaatatttgctttgtgagagtgtgggtgtactgggacatta-ggtgagagttagagaagtctatgt 6139976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 387
Target Start/End: Original strand, 6138206 - 6138356
Alignment:
Q  236 agacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttattttgt 335  Q
    ||||| ||||||||||||| | |||| |||||||||||| |||||||||||| ||||   ||||| ||| ||| |||||||||||||||||||  |||||    
T  6138206 agaccaagactatatattgaacctagtttctttgttttttgatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatatttgctttgt 6138305  T
Q  336 gagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtg 387  Q
    |||||||| | |||| | || |||| |||||||||| | |||||||||||||    
T  6138306 gagagtgtgggtgtattggggcatt-gggtgagagttagagaagtctatgtg 6138356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 221 - 389
Target Start/End: Original strand, 5397341 - 5397504
Alignment:
Q  221 ggtgaagcaaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagttt 320  Q
    |||||||||| ||||||||| || ||||||||| || |||||||||||||||||||||||||      |||    ||||| ||| ||| | ||||| |||    
T  5397341 ggtgaagcaaagggaagaccaaggctatatattagacctaggttctttgtttttagatgcac------gtaacactttaagcttatatctaacttaattt 5397434  T
Q  321 aaatatttattttgtgagagtgttgttgtactaggacattagg-gtgagagtgatagaagtctatgtgtt 389  Q
    ||||||||||||||||||||||| |||| ||  ||||||| || |||||||||| |||||||||||||||    
T  5397435 aaatatttattttgtgagagtgtggttgcaccgggacattgggcgtgagagtgagagaagtctatgtgtt 5397504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 351
Target Start/End: Original strand, 43834975 - 43835081
Alignment:
Q  245 ctatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttattttgtgagagtgtt 344  Q
    |||||||||| | ||| |||||| ||||| ||||||| ||||| ||||   |||||||||  || |||||| |||||||||||| |||||||| |||||     
T  43834975 ctatatattgaacctaagttcttagttttaagatgcatcagtcagtagcactttaaacttacatctgacttggtttaaatatttgttttgtgatagtgtg 43835074  T
Q  345 gttgtac 351  Q
    |||||||    
T  43835075 gttgtac 43835081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 2595610 - 2595549
Alignment:
Q  18 caaaggttatagtctttttctggtatgttg-----aaggctcccaacaagagcaaacttagc 74  Q
    |||||||||||||||||||||||||||| |     |||||||||||||||||||||||||||    
T  2595610 caaaggttatagtctttttctggtatgtcgtgtcgaaggctcccaacaagagcaaacttagc 2595549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 6138118 - 6138179
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattgg 197  Q
    ||||||||||||||||||||||||||     ||||||||||||||||| |||  ||||| ||||||    
T  6138118 tgttgggtttgattgtcaagtttcttg----aataaagaaggaggttagaaaaaattagttattgg 6138179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 43635773 - 43635710
Alignment:
Q  320 taaatatttattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctat 384  Q
    |||||||||  ||||||||||||| |||||| | || ||||| ||||||||||| ||||||||||    
T  43635773 taaatatttgatttgtgagagtgtggttgtattggggcatta-ggtgagagtgagagaagtctat 43635710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 43834909 - 43834941
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaa 164  Q
    ||||||||||||||||||||||||||| |||||    
T  43834909 tgttgggtttgattgtcaagtttcttaaataaa 43834941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 132 - 389
Target Start/End: Complemental strand, 7278263 - 7278010
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaag 231  Q
    ||||||||||||||||||||||||||| ||||||||    |||||||||||| |||| |||||||||  ||||||||||| ||||||||||||||||||     
T  7278263 tgttgggtttgattgtcaagtttcttaaataaataa----ggaggttaaaaaatatttgctattggaaaagtcctacatcgcttagtgtggtgaagcaat 7278168  T
Q  232 gggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttatt 331  Q
    |||| ||||  |||||||||||||| ||||||||||||||| |||||||||||||| ||||   ||||| ||| ||| |||||||||||||||||||  |    
T  7278167 gggaggaccatgactatatattggacctaggttctttgtttgtagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatatttgct 7278068  T
Q  332 ttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    |||||||||| |  ||||||| |  |||| |||||||||||| |||||||||||||||    
T  7278067 ttgtgagagtatgattgtactggagcattggggtgagagtgagagaagtctatgtgtt 7278010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 133 - 350
Target Start/End: Complemental strand, 392521 - 392305
Alignment:
Q  133 gttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagca 229  Q
    |||||||||||||||||||||||||     ||||||||||||||||| ||| |||||| |||||| |     |||| ||||| |||||| | ||||||||    
T  392521 gttgggtttgattgtcaagtttcttg----aataaagaaggaggttagaaaatattagttattggtgattatgtcccacatcgcttagtttagtgaagca 392426  T
Q  230 aggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattta 329  Q
    ||||||||||| || |||||||||| |  ||| |||||||||||||||| || ||||  ||||   ||||| ||| ||| |||||||||||||||||||     
T  392425 aggggaagaccaaggctatatattgaacgtagtttctttgtttttagatacatcagttagtagcactttaagcttatatctgacttagtttaaatatttg 392326  T
Q  330 ttttgtgagagtgttgttgta 350  Q
     ||||||||||||| ||||||    
T  392325 ctttgtgagagtgtggttgta 392305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 187 - 389
Target Start/End: Complemental strand, 7284764 - 7284562
Alignment:
Q  187 ttagctattggaggagtcctacatcacttagtgtggtgaagcaaggggaagacctagactatatattggatctaggtt-ctttgtttttagatgcaccag 285  Q
    ||||||||||||| |||||||| ||||||||| |||||||||| ||| |||||  |||  || ||||||| |||| || ||||||||||||| ||||||     
T  7284764 ttagctattggagaagtcctacgtcacttagtatggtgaagcatgggaaagaca-agatcatgtattggacctagatttctttgtttttagacgcaccaa 7284666  T
Q  286 tcggtagtgttttaaacttttatgtgacttagtttaaatatttattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatg 385  Q
    |  |||    ||||||||| ||| ||||||||||||||||||| ||||||||||||| || |||| | || |||| |||||||| ||| |||||||||||    
T  7284665 ttagtaccactttaaacttatatctgacttagtttaaatatttgttttgtgagagtgatgctgtagtggggcattggggtgagaatgagagaagtctatg 7284566  T
Q  386 tgtt 389  Q
    ||||    
T  7284565 tgtt 7284562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 281
Target Start/End: Original strand, 3581328 - 3581475
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaag 231  Q
    |||| ||||||||||||||||||||||    ||||||||||||||||||||| |||||||||| |||| ||||  ||||  | ||||||||| |||||||    
T  3581328 tgttaggtttgattgtcaagtttctta----aataaagaaggaggttaaaaaatattagctatgggagaagtctcacatttcatagtgtggttaagcaag 3581423  T
Q  232 gggaagacctagac--tatatattggatctaggttctttgtttttagatgca 281  Q
    || ||| |  || |  |||||||||||  |||||||||||||||| ||||||    
T  3581424 ggaaaggctaaggctatatatattggacataggttctttgttttttgatgca 3581475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 3581496 - 3581572
Alignment:
Q  313 cttagtttaaatatttattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    ||||||||||||||||  ||||||||||||| ||||||   || |||| ||| | |||||| | |||||||||||||    
T  3581496 cttagtttaaatattttctttgtgagagtgtggttgtatcggggcattggggggtgagtgagataagtctatgtgtt 3581572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 132 - 389
Target Start/End: Complemental strand, 15588865 - 15588612
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaag 231  Q
    |||||||| |||||||||||||||||     ||||||||||||||||| ||| |||||| |||||||| ||||| |||||||||||| ||||||||||||    
T  15588865 tgttgggtatgattgtcaagtttcttg----aataaagaaggaggttacaaaatattagttattggagaagtcccacatcacttagtttggtgaagcaag 15588770  T
Q  232 gggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttatt 331  Q
     |||||||| || ||||||||||    || |||||||||||||||||||||| ||| ||||    |||| ||| ||| ||||||||||||||||||| ||    
T  15588769 aggaagaccaaggctatatattgatggtacgttctttgtttttagatgcacctgtcagtagcacgttaagcttatatttgacttagtttaaatatttgtt 15588670  T
Q  332 ttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    |||||||||| | |||||||| || |||| |||| ||||||| |||||||||||||||    
T  15588669 ttgtgagagtttggttgtactggggcattggggtaagagtgagagaagtctatgtgtt 15588612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 132 - 389
Target Start/End: Complemental strand, 5449075 - 5448820
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagc 228  Q
    ||||||||||||||||||||||||||     |||||| ||||| |||| ||| ||||||||||||| |     || | ||||| |||||| | |||||||    
T  5449075 tgttgggtttgattgtcaagtttcttg----aataaaaaaggatgttagaaaatattagctattggtgattatgttccacatcgcttagtttagtgaagc 5448980  T
Q  229 aaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattt 328  Q
    |||||||| ||| |  |||||||||| | |||| ||||||||||||||||||||||||| ||||   ||||| ||| ||| | |||||||||||||||||    
T  5448979 aaggggaataccaatgctatatattgaacctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctaacttagtttaaatattt 5448880  T
Q  329 attttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
      ||||||||||||| | |||||| || |||| ||||||||||||||||||||||||||||    
T  5448879 tctttgtgagagtgtgggtgtactggggcatt-gggtgagagtgatagaagtctatgtgtt 5448820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 132 - 389
Target Start/End: Complemental strand, 5440065 - 5439810
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagc 228  Q
    ||||||||||||||||||||||||||     |||||| ||||| |||| ||| ||||||||||||| |     || | ||||| |||||| | |||||||    
T  5440065 tgttgggtttgattgtcaagtttcttg----aataaaaaaggatgttagaaaatattagctattggtgattatgttccacatcgcttagtttagtgaagc 5439970  T
Q  229 aaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattt 328  Q
    |||||||| ||| |  |||||||||| | |||| || |||||||||||||||||||||| ||||   ||||| ||| ||| | ||| |||||||||||||    
T  5439969 aaggggaataccaatgctatatattgaacctagtttatttgtttttagatgcaccagtcagtagcactttaagcttatatctaactcagtttaaatattt 5439870  T
Q  329 attttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
      ||||||||||||| | |||||| || |||| ||||||||||||||||||||||||||||    
T  5439869 tctttgtgagagtgtggatgtactggggcatt-gggtgagagtgatagaagtctatgtgtt 5439810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 129 - 282
Target Start/End: Complemental strand, 15590003 - 15589853
Alignment:
Q  129 aagtgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattgg-aggagtcctacatcacttagtgtggtgaag 227  Q
    ||||||| |||||||||||||| ||||||     ||||||||||||||||||||| |||||| |||||| || ||||  || ||||||||| ||||||||    
T  15590003 aagtgtttggtttgattgtcaaatttcttg----aataaagaaggaggttaaaaaatattagttattgggagaagtcacacgtcacttagtttggtgaag 15589908  T
Q  228 caaggggaagacctagactatatattggatctaggttctttgtttttagatgcac 282  Q
    ||||||||||||| || |||||||||| ||||||||||||||| |||||||||||    
T  15589907 caaggggaagaccaaggctatatattgaatctaggttctttgtatttagatgcac 15589853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 246 - 389
Target Start/End: Complemental strand, 5438959 - 5438815
Alignment:
Q  246 tatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttattttgtgagagtgttg 345  Q
    ||||||||| |  ||| |||||||||||||||||||||||||  |||   ||||| ||| ||| | ||||||||||||||||| |||||||||||||| |    
T  5438959 tatatattgaacatagtttctttgtttttagatgcaccagtcaatagcactttaagcttatatataacttagtttaaatatttgttttgtgagagtgtgg 5438860  T
Q  346 ttgtactaggac-attagggtgagagtgatagaagtctatgtgtt 389  Q
     |||||| || |  || |||||||||||| |||||||||||||||    
T  5438859 gtgtactggggcgtttggggtgagagtgagagaagtctatgtgtt 5438815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 246 - 389
Target Start/End: Complemental strand, 5447969 - 5447825
Alignment:
Q  246 tatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttattttgtgagagtgttg 345  Q
    ||||||||| |  ||| ||||||||| |||||||||||||||  |||   ||||| ||| ||| | ||||||||||||||||| |||||||||||||| |    
T  5447969 tatatattgaacatagtttctttgttcttagatgcaccagtcaatagcactttaagcttatatataacttagtttaaatatttgttttgtgagagtgtgg 5447870  T
Q  346 ttgtactaggac-attagggtgagagtgatagaagtctatgtgtt 389  Q
     |||||| || |  || |||||||||||| |||||||||||||||    
T  5447869 gtgtactggggcgtttggggtgagagtgagagaagtctatgtgtt 5447825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 134 - 389
Target Start/End: Original strand, 32341995 - 32342247
Alignment:
Q  134 ttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaaggg 233  Q
    |||| |||||||||||||||||||   | ||||||||| ||||||||||| |||||  ||||||||  |||  |||||  ||||| ||||||||||| ||    
T  32341995 ttggatttgattgtcaagtttctt---tgaataaagaaagaggttaaaaaatattaattattggagacgtctcacatcggttagtttggtgaagcaaagg 32342091  T
Q  234 gaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttatttt 333  Q
    ||||||| || |||||||||| || || |||||||||||||||||||||| ||| |||    ||||| ||| ||| ||||||||||||||||||| ||||    
T  32342092 gaagaccaaggctatatattgaatataagttctttgtttttagatgcaccggtcagtaacactttaagcttatatctgacttagtttaaatatttgtttt 32342191  T
Q  334 gtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    |||||||||| |||||||| || |||| |||||||||||| |||||| ||||||||    
T  32342192 gtgagagtgtggttgtactggggcattcgggtgagagtgagagaagtttatgtgtt 32342247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 132 - 352
Target Start/End: Complemental strand, 14764042 - 14763823
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagc 228  Q
    ||||||||||||||||||||||| ||     ||||||||||||||||| ||| |||||| |||||| |     |||| ||||| |||||| | |||||||    
T  14764042 tgttgggtttgattgtcaagtttgttg----aataaagaaggaggttagaaaatattagttattggtgattatgtcccacatcgcttagtttagtgaagc 14763947  T
Q  229 aaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattt 328  Q
    |||||||||||| |  |||| ||||| |||||| ||||||||||||||||| ||||||| ||||   ||||| ||| ||| |||||||||||||||||||    
T  14763946 aaggggaagaccaaagctatttattgaatctagtttctttgtttttagatgtaccagtcagtagcactttaagcttgtatctgacttagtttaaatattt 14763847  T
Q  329 attttgtgagagtgttgttgtact 352  Q
      ||||||||||||| | ||||||    
T  14763846 gctttgtgagagtgtgggtgtact 14763823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 132 - 389
Target Start/End: Complemental strand, 14766619 - 14766364
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagc 228  Q
    ||||||||||||||||||||||| ||     |||||| |||||||||| ||| |||||| |||||| |     |||| |||||||||||| | |||||||    
T  14766619 tgttgggtttgattgtcaagtttgttg----aataaacaaggaggttagaaaatattagttattggtgattatgtccaacatcacttagtttagtgaagc 14766524  T
Q  229 aaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattt 328  Q
    |||| ||||||| || |||||||||| | |||| || ||||||||||||||||| ||||  |||   ||||| ||| ||| |||||||||||||||||||    
T  14766523 aaggagaagaccaaggctatatattgaacctagtttttttgtttttagatgcactagtcaatagcactttaagcttgtatctgacttagtttaaatattt 14766424  T
Q  329 attttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
       |||||||||||| | |||| | || |||| ||||| |||||| |||||||||||||||    
T  14766423 gcattgtgagagtgtggctgtattggggcatt-gggtgtgagtgagagaagtctatgtgtt 14766364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 202 - 380
Target Start/End: Complemental strand, 21118574 - 21118396
Alignment:
Q  202 gtcctacatcacttagtgtggtgaagcaaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaa 301  Q
    |||| ||||| |||||| | |||||||||| ||||| || || |||||||||| | |||| |||||||||||||||||||||||||  |||   |||||     
T  21118574 gtcccacatcgcttagtttagtgaagcaagaggaaggccaaggctatatattgaacctagtttctttgtttttagatgcaccagtcaatagcactttaag 21118475  T
Q  302 cttttatgtgacttagtttaaatatttattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagt 380  Q
    ||| ||| ||||||||||||||||||  ||||||||||||||   |||||| || |||| |||||||||| | ||||||    
T  21118474 cttatatctgacttagtttaaatattagttttgtgagagtgtgtgtgtactggggcattggggtgagagttaaagaagt 21118396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 213 - 343
Target Start/End: Complemental strand, 21118845 - 21118715
Alignment:
Q  213 cttagtgtggtgaagcaaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtga 312  Q
    |||||| | |||||||||| ||||| || || |||||||||| | |||| ||||||||||||||||||||||||| ||||   ||||| ||| ||| |||    
T  21118845 cttagtttagtgaagcaagaggaaggccaaggctatatattgaacctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctga 21118746  T
Q  313 cttagtttaaatatttattttgtgagagtgt 343  Q
    |||||||||||||||  ||||||||||||||    
T  21118745 cttagtttaaatattagttttgtgagagtgt 21118715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 20726704 - 20726789
Alignment:
Q  163 aataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaaggggaagacctagactat 248  Q
    ||||||||||||||||||||| |||||| ||||| ||  |||| ||||  |||||| |||||||||||| |||||||| |||||||    
T  20726704 aataaagaaggaggttaaaaaatattagttattgaagatgtcccacattgcttagtttggtgaagcaagaggaagaccaagactat 20726789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 132 - 389
Target Start/End: Complemental strand, 35430119 - 35429864
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagc 228  Q
    ||||||||||||||||||||||||||     ||||||||||||||||| ||| |||||| |||||| |     |||| ||||| |||| | | |||||||    
T  35430119 tgttgggtttgattgtcaagtttcttg----aataaagaaggaggttagaaaatattagttattggtgattatgtccgacatcgcttattttagtgaagc 35430024  T
Q  229 aaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattt 328  Q
    |||||||||||| ||||||||||||| | |||| ||||||||||||||| ||||||||| ||||   ||||| ||| ||| |||||||||||||||||||    
T  35430023 aaggggaagaccaagactatatattgaacctagtttctttgtttttagaagcaccagtcagtagcactttaagcttatatctgacttagtttaaatattt 35429924  T
Q  329 attttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
      ||||||||||||| | |||||| || |||| |||||||||| | |||||||||||||||    
T  35429923 gctttgtgagagtgtgggtgtactggggcatt-gggtgagagttagagaagtctatgtgtt 35429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 132 - 344
Target Start/End: Original strand, 18009106 - 18009314
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaag 231  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||||||| ||||| |  || |||||||||||||| |||     
T  18009106 tgttgggtttgattgtcaagtttctta----aataaagaaggaggttaaaaaatattagctattggagaagtcccaagtcgcttagtgtggtgaaacaac 18009201  T
Q  232 gggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttatt 331  Q
    || |||| | ||  ||||||||||| |||| ||| ||||||||| ||||||||||| ||||   ||||||||| ||| |||||||||||||||||||  |    
T  18009202 ggaaagatcaaggttatatattggacctagattcgttgtttttaaatgcaccagtcagtagcactttaaacttatatttgacttagtttaaatattttct 18009301  T
Q  332 ttgtgagagtgtt 344  Q
    |||||| ||||||    
T  18009302 ttgtgaaagtgtt 18009314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 133 - 389
Target Start/End: Complemental strand, 30921826 - 30921577
Alignment:
Q  133 gttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaagg 232  Q
    |||||||||||||||||||||||||     |||||||||||||||||||||  ||||| |||||||| ||||| ||||||||||||||||| || ||| |    
T  30921826 gttgggtttgattgtcaagtttcttg----aataaagaaggaggttaaaaac-attagatattggagaagtcccacatcacttagtgtggtaaaacaaag 30921732  T
Q  233 ggaagacctagactatatattggatctaggttctttgt-ttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttatt 331  Q
    |||||||| |   |||||||||||  |||||||||||| |||||||| |||    |  |||   ||||||||| ||| | | |||||||||||| ||  |    
T  30921731 ggaagaccaatgttatatattggacgtaggttctttgttttttagatacac---acattagcactttaaacttatatctaagttagtttaaataattgct 30921635  T
Q  332 ttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    ||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||    
T  30921634 ttgtgagagcgtggttgtactaggtcattagggtgagagtgagagaagtctatgtgtt 30921577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 134 - 343
Target Start/End: Complemental strand, 7400678 - 7400471
Alignment:
Q  134 ttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagcaa 230  Q
    ||||||||||||||||||||||||     ||||||||| ||||||||||| |||||| |||||| |     |||| ||||| |||||| | ||| |||||    
T  7400678 ttgggtttgattgtcaagtttcttg----aataaagaaagaggttaaaaa-tattagttattggtgattatgtccgacatcgcttagtttagtggagcaa 7400584  T
Q  231 ggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttat 330  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||||||||| ||| ||||   ||||| ||| ||| ||||||||||||||||||| |    
T  7400583 ggggaagaccaagactatatattgaacctaggttctttgtttttagatgcaccggtcagtagcactttaagcttatatctgacttagtttaaatatttgt 7400484  T
Q  331 tttgtgagagtgt 343  Q
    |||||||||||||    
T  7400483 tttgtgagagtgt 7400471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 163 - 389
Target Start/End: Original strand, 41340973 - 41341201
Alignment:
Q  163 aataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagcaaggggaagacctagactatatattggatct 259  Q
    ||||||||||||||||| ||| |||||| |||||| ||    |||| ||||| |||||| | ||||||||||||||||||| |   ||||||||  | ||    
T  41340973 aataaagaaggaggttataaaatattagttattggtggttatgtcccacatcgcttagtttagtgaagcaaggggaagaccaaagttatatattaaacct 41341072  T
Q  260 aggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttattttgtgagagtgttgttgtactaggacat 359  Q
    || ||||||||||||||||||||||||| ||||   ||||| ||| ||| ||||||||||||||| |||  ||||||||||||| | |||||| || |||    
T  41341073 agtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatgtttgctttgtgagagtgtgggtgtactggggcat 41341172  T
Q  360 tagggtgagagtgatagaagtctatgtgtt 389  Q
    | |||||||| | | |||||||||||||||    
T  41341173 t-gggtgagaattagagaagtctatgtgtt 41341201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 132 - 286
Target Start/End: Original strand, 7658881 - 7659032
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaag 231  Q
    ||||||||||||||||||||||| ||| ||||  |   |||||||||||||| |||||| |||||||| ||||||||||| |||||||||||| ||||||    
T  7658881 tgttgggtttgattgtcaagttttttaaataagga---aaggaggttaaaaaatattagttattggagaagtcctacatcgcttagtgtggtggagcaag 7658977  T
Q  232 gggaagacctagactatatattggatctaggttctttgtttttagatgcaccagt 286  Q
      ||||||| |  |||||||||| || ||||||||||||||| ||||| ||||||    
T  7658978 acgaagaccaatgctatatattgaatttaggttctttgttttcagatgtaccagt 7659032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 132 - 389
Target Start/End: Complemental strand, 35428537 - 35428281
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagc 228  Q
    |||||||||||||||||||||||      | ||||||||||||||||| ||| |||||| |||||| |     |||| | ||| |||| | | |||||||    
T  35428537 tgttgggtttgattgtcaagttt------tgaataaagaaggaggttagaaaatattagttattggtgattatgtcccaaatcgcttattttagtgaagc 35428444  T
Q  229 aaggggaagacctagactatatattggatctagg---ttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaata 325  Q
    || ||||||||| || |||||||||| | ||||    ||||||||||||||||||||||||| ||||   ||||| ||| ||| ||||||||||||||||    
T  35428443 aatgggaagaccaaggctatatattgaacctagtaatttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaata 35428344  T
Q  326 tttattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    ||| |||||||||  ||| | |||||||||  ||| |||| ||||| | |||||||||||||||    
T  35428343 tttgttttgtgaggttgtgggtgtactagggtatt-gggtcagagttagagaagtctatgtgtt 35428281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 13661627 - 13661684
Alignment:
Q  134 ttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctatt 195  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||| |||||| ||||    
T  13661627 ttgggtttgattgtcaagtttcttg----aataaagaaggaggttaaaaaatattagttatt 13661684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 13661995 - 13662040
Alignment:
Q  315 tagtttaaatatttattttgtgagagtgttgttgtactaggacatt 360  Q
    ||||||||||||| ||||||||||||||| | |||| |||||||||    
T  13661995 tagtttaaatattaattttgtgagagtgtgggtgtattaggacatt 13662040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 137 - 389
Target Start/End: Complemental strand, 41848551 - 41848302
Alignment:
Q  137 ggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaaggggaa 236  Q
    ||||||||||| ||||||||||    ||||||||||||||||||||| ||||||||||||||| |||   ||| | ||||||||||||||||||||||||    
T  41848551 ggtttgattgttaagtttctta----aataaagaaggaggttaaaaaatattagctattggagaagttaaacaccgcttagtgtggtgaagcaaggggaa 41848456  T
Q  237 ga-cctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttattttgt 335  Q
     | || |  ||||||||| ||  | ||||||||||||||||||||| ||||| ||||  |||| | ||| ||| ||| ||||||||||||||| |||| |    
T  41848455 aaaccaatgctatatattcgactttggttctttgtttttagatgcatcagtcagtagcatttttagcttatatctgatttagtttaaatatttgttttat 41848356  T
Q  336 gagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    || ||||| |||||||| | ||||| |||  ||||||| |||||||||||||||    
T  41848355 gaaagtgtggttgtactggaacattggggctagagtgagagaagtctatgtgtt 41848302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 130 - 389
Target Start/End: Original strand, 31322483 - 31322739
Alignment:
Q  130 agtgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagca 229  Q
    |||||| ||||||||||||||||||||||    | |||||||||||||| |||| |||||| |||||||| ||||  |||| |||||||||||||||| |    
T  31322483 agtgttaggtttgattgtcaagtttctta----attaaagaaggaggtttaaaaatattagatattggagaagtctcacattacttagtgtggtgaagta 31322578  T
Q  230 aggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattta 329  Q
    || |||||||| ||  ||||||||||| ||||||||||||||||||||||||||| ||  | |   ||||| ||| ||| |||||||||||||||||||     
T  31322579 agaggaagaccaaggttatatattggacctaggttctttgtttttagatgcaccattcaatggcactttaagcttatatctgacttagtttaaatatttt 31322678  T
Q  330 ttttgtgagagtgttgttgtactaggaca-ttagggtgagagtgatagaagtctatgtgtt 389  Q
     |||||| ||| || ||||| || || || || |||||||||||| | |||||||| ||||    
T  31322679 ctttgtgggagagtggttgtgctggggcatttggggtgagagtgagaaaagtctatatgtt 31322739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 228 - 389
Target Start/End: Original strand, 14508729 - 14508890
Alignment:
Q  228 caaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatt 327  Q
    ||||||||||||| || |||||||||| | |||||||||| ||||||||||| ||||||| ||||   ||||| ||| ||| |||| |||||||||||||    
T  14508729 caaggggaagaccaaggctatatattgaacctaggttcttagtttttagatgtaccagtcagtagcactttaagcttatatctgacctagtttaaatatt 14508828  T
Q  328 tattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    |  ||||||||||||| ||||||||||| |  | |||||||||||| |||||||||||||||    
T  14508829 tgctttgtgagagtgtggttgtactagggccatggggtgagagtgagagaagtctatgtgtt 14508890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 132 - 285
Target Start/End: Complemental strand, 45676830 - 45676679
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagga---gtcctacatcacttagtgtggtgaagc 228  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||| ||||||||||||| |     |||||||||| |||||| | |||||||    
T  45676830 tgttgggtttgattgtcaagtttcttg----aataaagaaggaggttaaaaa-tattagctattggtgattatgtcctacatcgcttagtttagtgaagc 45676736  T
Q  229 aaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccag 285  Q
    ||||| ||| |  ||||||||||||| | ||||||||||||||||||||||||||||    
T  45676735 aagggaaaggctaagactatatattgaacctaggttctttgtttttagatgcaccag 45676679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 384
Target Start/End: Original strand, 31327111 - 31327360
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaag-tattagctattggaggagtcctacatcacttagtgtggtgaagcaa 230  Q
    ||||||||||||||||||| |||||||    |||||| |||||| |||||||  ||||| ||||||||| |||||  |||  ||||||||||||||||||    
T  31327111 tgttgggtttgattgtcaaatttctta----aataaaaaaggagattaaaaaaatattacctattggagaagtcccgcattgcttagtgtggtgaagcaa 31327206  T
Q  231 ggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttat 330  Q
     || |||||| |  |||||||||  | ||||||||| | |||||| || |||||||  ||||   |||||  || ||| ||||||| |||||||||||||    
T  31327207 aggaaagaccaatgctatatattcaacctaggttctctatttttatatacaccagtaagtagcactttaagtttatatctgacttaatttaaatatttat 31327306  T
Q  331 tttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctat 384  Q
    ||| ||||| |||  ||||||||||  | ||||||||| |||| ||||||||||    
T  31327307 tttatgagattgtgattgtactagggtaatagggtgagtgtgagagaagtctat 31327360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 220 - 370
Target Start/End: Complemental strand, 10550141 - 10549993
Alignment:
Q  220 tggtgaagcaaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtt 319  Q
    ||||||||||||||||| ||  || |  ||||||| | |||||||||||||||||||||||||||||| ||||   |||||  || ||| ||||| ||||    
T  10550141 tggtgaagcaaggggaaaactaaggc--tatattgaacctaggttctttgtttttagatgcaccagtcagtagcactttaagtttatatctgactcagtt 10550044  T
Q  320 taaatatttattttgtgagagtgttgttgtactaggacattagggtgagag 370  Q
    ||||||||| |||||||||||||| |||||||| |  |||| |||||||||    
T  10550043 taaatatttgttttgtgagagtgtggttgtactggagcatttgggtgagag 10549993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 10550201 - 10550139
Alignment:
Q  131 gtgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattgg 197  Q
    |||||||||||||||||||||||||||     ||||||||| |||||||||||  ||||| ||||||    
T  10550201 gtgttgggtttgattgtcaagtttcttg----aataaagaatgaggttaaaaaacattagttattgg 10550139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 132 - 385
Target Start/End: Complemental strand, 31073894 - 31073643
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaag 231  Q
    ||||||||||||||||||||||||||     ||||||||||||||| ||||| |||||| |||||||| | ||| |||||  ||||| ||||||||| ||    
T  31073894 tgttgggtttgattgtcaagtttcttg----aataaagaaggaggtgaaaaaatattagttattggagaaatcccacatcggttagtttggtgaagcgag 31073799  T
Q  232 gggaagacctagactatatattggatctaggttctttg--tttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattta 329  Q
    ||||||| | |  |||||||||| | |||||||||||   | ||||  |||| ||||| ||||  |||||||||| ||| | |||||||||||||||||     
T  31073798 gggaagatcaatgctatatattgaacctaggttctttaaatatttaactgcaacagtcagtagcattttaaacttatatctaacttagtttaaatatttg 31073699  T
Q  330 ttttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatg 385  Q
    ||||||||| |||| ||| |||| || ||||||||||||||||| |||||||||||    
T  31073698 ttttgtgagggtgtggttatactggggcattagggtgagagtgagagaagtctatg 31073643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 130 - 342
Target Start/End: Complemental strand, 4660320 - 4660113
Alignment:
Q  130 agtgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagca 229  Q
    |||||||||||||||||||||||||||||    ||||||||||||| || |||| ||||||||||||||| | ||  ||||| |||||| ||||||||||    
T  4660320 agtgttgggtttgattgtcaagtttctta----aataaagaaggagattgaaaaatattagctattggagaaatctcacatcgcttagtttggtgaagca 4660225  T
Q  230 aggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatattta 329  Q
    ||||||||||| |  |||||||||| | |||| |||||||||||| |||||||| ||| ||||   |||||  || ||| |||||||||||||||||||     
T  4660224 aggggaagaccaatgctatatattgaacctagtttctttgttttt-gatgcaccggtcagtagcactttaagattatatctgacttagtttaaatatttg 4660126  T
Q  330 ttttgtgagagtg 342  Q
     ||||||||||||    
T  4660125 gtttgtgagagtg 4660113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 285
Target Start/End: Complemental strand, 33301223 - 33301074
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaag 231  Q
    |||||||||||| |||||||||||||| ||||||||    ||||||| |||| ||||||||||| ||| ||||  | ||||||||||||||||||| |||    
T  33301223 tgttgggtttgaatgtcaagtttcttaaataaataa----ggaggttgaaaaatattagctatttgagaagtcacatatcacttagtgtggtgaagtaag 33301128  T
Q  232 gggaagacctagactatatattggatctaggttctttgtttttagatgcaccag 285  Q
    ||||||||| || |||||||||| |   | |||||||||||||||||| |||||    
T  33301127 gggaagaccaaggctatatattgaactcatgttctttgtttttagatgtaccag 33301074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 220 - 389
Target Start/End: Original strand, 20594612 - 20594781
Alignment:
Q  220 tggtgaagcaaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtt 319  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||| |||  ||    | ||| ||| ||| |||| |||||    
T  20594612 tggtgaagcaaggggaagaccaagactatatattgaacctaggttctttatttttagatgcaccggtcaataacactctaagcttatatctgacatagtt 20594711  T
Q  320 taaatatttattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    ||||||||| |||||||||||||| |||||||| |   ||| |||||||| ||| |||||  ||||||||    
T  20594712 taaatatttgttttgtgagagtgtggttgtactggaggattggggtgagaatgagagaaggttatgtgtt 20594781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 132 - 370
Target Start/End: Complemental strand, 38183319 - 38183082
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggagg----agtcctacatcacttagtgtggtgaag 227  Q
    ||||||||||||||||||||||||||     ||||||||||||||||| ||| |||||| |||||| |     | ||| ||||| |||||| | ||||||    
T  38183319 tgttgggtttgattgtcaagtttcttg----aataaagaaggaggttagaaaatattagttattggtgactatattcc-acatcgcttagtttagtgaag 38183225  T
Q  228 caaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatt 327  Q
    ||||| ||||||| || |||||||||| |||||| ||||||||||||||||||||||||| ||||   ||||| ||| ||| |||||||| |||||||||    
T  38183224 caaggtgaagaccaaggctatatattgaatctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttaggttaaatatt 38183125  T
Q  328 tattttgtgagagtgttgttgtactaggacattagggtgagag 370  Q
    |  ||||||||||||| | |||||| || |||| |||| ||||    
T  38183124 tgctttgtgagagtgtgggtgtactggggcattggggttagag 38183082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 132 - 388
Target Start/End: Original strand, 3371317 - 3371573
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaag 231  Q
    ||||| ||||||||||||| ||||||  ||||| |||||    | ||||||| |||||| |||| ||| ||||  | ||| |||||| |||||||||||     
T  3371317 tgttgagtttgattgtcaaatttcttgaataaaaaaaga----gtttaaaaaatattagttattagagaagtctcatatcgcttagtttggtgaagcaaa 3371412  T
Q  232 gggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaac----ttttatgtgacttagtttaaatatt 327  Q
    ||||||||| || |||||||||  | |||||||| ||||||||||||||| |||||  |||   |||||||    || ||| ||||||| ||||||||||    
T  3371413 gggaagaccaaggctatatattaaacctaggttccttgtttttagatgcatcagtcaatagaactttaaacttatttatatctgacttaatttaaatatt 3371512  T
Q  328 tattttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgt 388  Q
    |  ||||||||||||| ||||| || |||||||  |||| |||||| ||||||||||||||    
T  3371513 tgctttgtgagagtgtggttgtcctgggacattgaggtgggagtgaaagaagtctatgtgt 3371573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 389
Target Start/End: Original strand, 1026711 - 1026961
Alignment:
Q  131 gtgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaa 230  Q
    |||||||||||||||||| ||||||||  |||||       |||||| ||||| |||||| |||||||| ||||  ||||  |||||| | |||||||||    
T  1026711 gtgttgggtttgattgtctagtttcttgaataaa-------ggaggtgaaaaaatattagttattggagaagtctcacatt-cttagtttagtgaagcaa 1026802  T
Q  231 ggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttat 330  Q
    |||||| ||| || |||||||| | |  |||||||||||||||||||||||||||||  ||||  | ||| ||| ||| || ||| ||||||||||||      
T  1026803 ggggaataccaaggctatatatcgaacgtaggttctttgtttttagatgcaccagtcaatagtactataagcttatatctgtctttgtttaaatattttc 1026902  T
Q  331 tttgtgagagtgttgttgtactaggacattagggtgagagtgatagaagtctatgtgtt 389  Q
    ||| ||||||||| |||||||| || |||| |||||  ||||| |||||| ||||||||    
T  1026903 tttctgagagtgtggttgtactggggcattggggtgcaagtgacagaagtttatgtgtt 1026961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 389
Target Start/End: Complemental strand, 17731191 - 17731024
Alignment:
Q  222 gtgaagcaaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagttta 321  Q
    |||||||||||||||| || || |||||||||| | |||| |||||| || ||||||||||||||| ||||   ||||| ||| ||| ||||||||||||    
T  17731191 gtgaagcaaggggaaggccaaggctatatattgaacctagtttctttattgttagatgcaccagtcagtagcactttaagcttatatctgacttagttta 17731092  T
Q  322 aatatttattttgtgagagtgttgttgtactaggacatt-agggtgagagtgatagaagtctatgtgtt 389  Q
    |||||||  ||||||| |||||   |||||| || ||||  |||||||||||| |||||||||||||||    
T  17731091 aatattttctttgtgacagtgtgagtgtact-gggcattgggggtgagagtgagagaagtctatgtgtt 17731024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 389
Target Start/End: Complemental strand, 19032422 - 19032255
Alignment:
Q  222 gtgaagcaaggggaagacctagactatatattggatctaggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagttta 321  Q
    |||||||||||||||| || || |||||||||| | |||| |||||| || ||||||||||||||| ||||   ||||| ||| ||| ||||||||||||    
T  19032422 gtgaagcaaggggaaggccaaggctatatattgaacctagtttctttattgttagatgcaccagtcagtagcactttaagcttatatctgacttagttta 19032323  T
Q  322 aatatttattttgtgagagtgttgttgtactaggacatt-agggtgagagtgatagaagtctatgtgtt 389  Q
    |||||||  ||||||| |||||   |||||| || ||||  |||||||||||| |||||||||||||||    
T  19032322 aatattttctttgtgacagtgtgagtgtact-gggcattgggggtgagagtgagagaagtctatgtgtt 19032255  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 337
Target Start/End: Original strand, 49582540 - 49582716
Alignment:
Q  161 taaataaagaaggaggttaaaaagtattagctattggaggagtcctacatcacttagtgtggtgaagcaaggggaagacctagactatatat-tggatct 259  Q
    ||||||||||||||||||||||| || ||||||||| || | ||  |||||| |||||||| |||||||||||||||||| |   || ||||   || ||    
T  49582540 taaataaagaaggaggttaaaaaataatagctattgaagaaatctcacatcatttagtgtgatgaagcaaggggaagaccaatgttagatataaagacct 49582639  T
Q  260 aggttctttgtttttagatgcaccagtcggtagtgttttaaacttttatgtgacttagtttaaatatttattttgtga 337  Q
    | ||||||||||||||||||||  |||| ||||   ||| ||||| ||| | |||||||||||||||||  |||||||    
T  49582640 aagttctttgtttttagatgcattagtcagtagcacttt-aacttatatctaacttagtttaaatatttgctttgtga 49582716  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 3372278 - 3372332
Alignment:
Q  132 tgttgggtttgattgtcaagtttcttatataaataaagaaggaggttaaaaagtattag 190  Q
    |||||| |||||||||||||||||||     ||||||||||||||||||||| ||||||    
T  3372278 tgttggatttgattgtcaagtttcttg----aataaagaaggaggttaaaaaatattag 3372332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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