View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_14 (Length: 480)
Name: NF21284_high_14
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 36741525 - 36741964
Alignment:
| Q |
19 |
agttcaacatcgattatgaacaagcaaaatgttgcatttataagagagatgattcatattctcaatatcaaaatattttagatgaaaatatggcatctca |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||| |||||||||||| |
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| T |
36741525 |
agtttaacatcgattatgaacaagcaaaatgttgcatttataagatagatgattcatattctcaatattataatattttagatgaaa-tatggcatctca |
36741623 |
T |
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| Q |
119 |
atctcttgatatcagatacattactttttaactattgtaaaacattaatcattaaacaattaannnnnnnngttaattatattgtgaatctagactcaaa |
218 |
Q |
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| T |
36741624 |
atctcttgatatcagatacattactttttaactattgtaaaacattaatcattaaacaattatttttttttgttaattatattgtgaatctagactcaaa |
36741723 |
T |
|
| Q |
219 |
tcacacgaataaacttagtagtgtagagcaagtatcaatgacagccaataattaaacagtcttaagcaacaaactaagaatttgtttacctagttttgtc |
318 |
Q |
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| T |
36741724 |
tcacacgaataa-cttaatagtatggagcaagtatcaatgacaaccaataattaaatagcctcaagcaacaaactaagaatttgcttacctagttttgtc |
36741822 |
T |
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| Q |
319 |
gaacaataatcaacatttgagagatggagcatctccacaatctactgtaaaatagtctcctcttttagttcaaaaagaacaaa-tttgatcttttatata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36741823 |
gaacaataatcaacatttgagagatggagcatctccccaatctactataaaatagtctcctcttttagttcaaaaagaacaaattttgatcttttatata |
36741922 |
T |
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| Q |
418 |
tacacttcaaaagccggaaaaaatgaccacgtgattgtctgt |
459 |
Q |
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| T |
36741923 |
tacacttcaaaagccggaaaaaatgaccacgtgattgtctgt |
36741964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 36741199 - 36741268
Alignment:
| Q |
19 |
agttcaacatcgattatgaacaagcaaaatgttgcatttataagagagatgattcatattctcaatatca |
88 |
Q |
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| T |
36741199 |
agtttaacatagattataaacaagcaaaatgttgtatttataagagagataattcatattctcaatatca |
36741268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 22552429 - 22552473
Alignment:
| Q |
217 |
aatcacacgaataaacttagtagtgtagagcaagtatcaatgaca |
261 |
Q |
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| T |
22552429 |
aatcacaccaataaacttagaggtgtggagcaagtatcaatgaca |
22552473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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