View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21284_high_15 (Length: 475)

Name: NF21284_high_15
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21284_high_15
NF21284_high_15
[»] chr1 (3 HSPs)
chr1 (218-456)||(8930716-8930966)
chr1 (27-70)||(50857614-50857657)
chr1 (15-70)||(13444147-13444200)
[»] chr6 (5 HSPs)
chr6 (15-70)||(30052079-30052134)
chr6 (15-70)||(30049792-30049847)
chr6 (15-70)||(3535912-3535965)
chr6 (15-70)||(3542123-3542176)
chr6 (15-70)||(29340965-29341019)
[»] scaffold0110 (2 HSPs)
scaffold0110 (15-70)||(46862-46917)
scaffold0110 (15-70)||(45420-45475)
[»] chr5 (2 HSPs)
chr5 (250-383)||(11307271-11307406)
chr5 (7-70)||(40778936-40778999)
[»] chr2 (8 HSPs)
chr2 (28-70)||(2155844-2155886)
chr2 (15-70)||(2165800-2165853)
chr2 (7-70)||(27952468-27952531)
chr2 (7-70)||(27956304-27956367)
chr2 (15-70)||(31633981-31634035)
chr2 (28-70)||(15129295-15129337)
chr2 (284-355)||(2895516-2895588)
chr2 (15-67)||(31636217-31636268)
[»] chr8 (4 HSPs)
chr8 (7-70)||(22922000-22922063)
chr8 (33-70)||(22926822-22926859)
chr8 (21-70)||(42891828-42891877)
chr8 (15-70)||(6845214-6845267)
[»] chr4 (2 HSPs)
chr4 (15-70)||(22691188-22691241)
chr4 (15-67)||(24667567-24667618)
[»] chr3 (2 HSPs)
chr3 (15-70)||(43306831-43306884)
chr3 (15-70)||(43304119-43304170)
[»] chr7 (1 HSPs)
chr7 (21-67)||(4300436-4300482)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 218 - 456
Target Start/End: Complemental strand, 8930966 - 8930716
Alignment:
Q  218 aaatgttttagctaattaaaagtgatgcttaactgaaaacacgg-tgaattcgtgtagtttgagatttggtatgttgagtaaactgactttggtgttgtt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  8930966 aaatgttttagctaattaaaagtgatgcttaactgaaaacacgggtgaattcgtgtagtttgagatttggtatgttgagtaaagtgactttggtgttgct 8930867  T
Q  317 ggccgggaaaacaggtgttaatggatatgtgttttatgtaagatagtgttcggtaact-----------acttcgtgaggatatctctcgagaaacatag 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||    
T  8930866 ggccgggaaaacaggtgttaatggatatgtgttttatgtaagatagtgttcggtaactaattcgtgataacttcgtgaggatatctctcgagaaacatag 8930767  T
Q  406 caatctctggacacatatacaccatggaagattgtttttaaggtcctaaag 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8930766 caatctctggacacatatacaccatggaagattgtttttaaggtcctaaag 8930716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 50857614 - 50857657
Alignment:
Q  27 aaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  50857614 aaaaagtgtgcctcttaggctgcataagttctgcttatatagtg 50857657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 13444147 - 13444200
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||| ||||||||||  |||| || ||||||| ||||||||||||||||||||||    
T  13444147 tattactgaataaaaa--tgtgcctcttaggctacataagttctgcttatatagtg 13444200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 30052134 - 30052079
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  30052134 tattaatgaataaaaaagtgtgtctcttaagctgcataagttttgcttatatagtg 30052079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 30049847 - 30049792
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||    
T  30049847 tattaatgaataaaaaagtgtgtctcttaagctgaataagttttgcttatatagtg 30049792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 3535965 - 3535912
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    |||||||||||||||  ||||| || ||||||||||||||||||||||||||||||    
T  3535965 tattaatgaataaaa--gtgtgcctcttaggctgcataagttctgcttatatagtg 3535912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 3542176 - 3542123
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    |||||||||||||||  ||||| || ||||||||||||||||||||||||||||||    
T  3542176 tattaatgaataaaa--gtgtgcctcttaggctgcataagttctgcttatatagtg 3542123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 29340965 - 29341019
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    |||||||||||||||| |||| | | ||||||||||||||||||||||||||||||    
T  29340965 tattaatgaataaaaa-gtgtttgtcttaggctgcataagttctgcttatatagtg 29341019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 46862 - 46917
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||    
T  46862 tattaatgaataaaaaagtgtgtctcttaagctggataagttttgcttatatagtg 46917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 45420 - 45475
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    |||||||||||||||| || || || |||||||||||||||||| |||||||||||    
T  45420 tattaatgaataaaaatgtttgcctcttaggctgcataagttctccttatatagtg 45475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 383
Target Start/End: Complemental strand, 11307406 - 11307271
Alignment:
Q  250 ctgaaaacac-ggtgaattcgtgtagtttgagatttggtatgttgagtaaactgactttggtgttgttggc-cgggaaaacaggtgttaatggatatgtg 347  Q
    |||||||||| |||||||| ||||||||||||   |||||||||||||||||| ||||| |||||| |||| ||| |||  |||||  ||| ||| ||||    
T  11307406 ctgaaaacacaggtgaattggtgtagtttgagggatggtatgttgagtaaactcacttttgtgttgctggcgcggaaaataaggtggcaatagatgtgtg 11307307  T
Q  348 ttttatgtaagatagtgttcggtaactacttcgtga 383  Q
    |||||||| | ||||| ||  ||||||| |||||||    
T  11307306 ttttatgtgatatagtattgagtaactagttcgtga 11307271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 40778936 - 40778999
Alignment:
Q  7 tcgaagaatattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||| ||| ||| ||||| |||||||||| || |||| || ||||||||||||||||||||||    
T  40778936 tcgaataattttattgaatcaaaaagtgtgcctcttagactacataagttctgcttatatagtg 40778999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 2155886 - 2155844
Alignment:
Q  28 aaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  2155886 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 2155844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 2165853 - 2165800
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||||||||||||||  ||||||| |||||||||||||||||| |||||||||||    
T  2165853 tattaatgaataaaaa--tgtgtctcttaggctgcataagttctccttatatagtg 2165800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 27952468 - 27952531
Alignment:
Q  7 tcgaagaatattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||| ||| ||| ||||| |||||||||| || ||||||| ||||||||||||||||||||||    
T  27952468 tcgaataattttattgaatcaaaaagtgtgcctcttaggctacataagttctgcttatatagtg 27952531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 27956304 - 27956367
Alignment:
Q  7 tcgaagaatattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||| ||| ||| ||||| |||||||||| || ||||||| ||||||||||||||||||||||    
T  27956304 tcgaataattttattgaatcaaaaagtgtgcctcttaggctacataagttctgcttatatagtg 27956367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 31634035 - 31633981
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||||||||||||||||| || || || ||||||||||||||| |||||||||||    
T  31634035 tattaatgaataaaaaagt-tgcctcttcggctgcataagttctacttatatagtg 31633981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 15129337 - 15129295
Alignment:
Q  28 aaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||||||| || ||||||| ||||||||||||||||||||||    
T  15129337 aaaagtgtgcctcttaggctacataagttctgcttatatagtg 15129295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 2895588 - 2895516
Alignment:
Q  284 tggtatgttgagtaaactgactttggtgttgttggccgggaaaac-aggtgttaatggatatgtgttttatgt 355  Q
    |||| ||||||||||||||||||| ||||||  |||  ||||||| |||||  ||||||| ||||||||||||    
T  2895588 tggtctgttgagtaaactgacttttgtgttgccggcttggaaaacaaggtgggaatggatgtgtgttttatgt 2895516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 31636268 - 31636217
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatata 67  Q
    ||||||||||||||||||| ||||| || |||| |||||||||| ||||||||    
T  31636268 tattaatgaataaaaaagt-tgtctcttcggctacataagttctacttatata 31636217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 22922000 - 22922063
Alignment:
Q  7 tcgaagaatattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||| ||| ||| ||||| |||| |||||||| |||||||||||||||||||| |||||||||    
T  22922000 tcgaataattttattgaatcaaaaggtgtgtctcttaggctgcataagttctgcatatatagtg 22922063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 22926822 - 22926859
Alignment:
Q  33 tgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  22926822 tgtgtctcttaggctgcataagttctgcttatatagtg 22926859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 42891828 - 42891877
Alignment:
Q  21 tgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||| |||||||||| || ||||||| ||||||||||||||||||||||    
T  42891828 tgaatcaaaaagtgtgcctcttaggctacataagttctgcttatatagtg 42891877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 6845267 - 6845214
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    ||||||||||| ||||||||| ||||  ||| | ||||||||||||||||||||||    
T  6845267 tattaatgaatcaaaaagtgtctctt--aggatacataagttctgcttatatagtg 6845214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 22691241 - 22691188
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    |||||||||||||||  ||||| || ||||||| ||||||||||||||||||||||    
T  22691241 tattaatgaataaaa--gtgtgcctcttaggctacataagttctgcttatatagtg 22691188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 24667618 - 24667567
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatata 67  Q
    |||||||||| | ||||||||| || ||||||| |||||||||||||||||||    
T  24667618 tattaatgaa-ataaaagtgtgcctcttaggctacataagttctgcttatata 24667567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 43306831 - 43306884
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    |||||||||||||||  ||||| || ||||||| ||||||||||||||||||||||    
T  43306831 tattaatgaataaaa--gtgtgcctcttaggctacataagttctgcttatatagtg 43306884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 43304119 - 43304170
Alignment:
Q  15 tattaatgaataaaaaagtgtgtcttttaggctgcataagttctgcttatatagtg 70  Q
    |||||||||||||||    |||||| ||||||| ||||||||||||||||||||||    
T  43304119 tattaatgaataaaa----gtgtctcttaggctacataagttctgcttatatagtg 43304170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 4300482 - 4300436
Alignment:
Q  21 tgaataaaaaagtgtgtcttttaggctgcataagttctgcttatata 67  Q
    ||||| ||||||||||||| ||||||| |||||||||| ||||||||    
T  4300482 tgaatcaaaaagtgtgtctcttaggctacataagttctccttatata 4300436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University