View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_16 (Length: 466)
Name: NF21284_high_16
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 4568423 - 4567989
Alignment:
| Q |
16 |
gggccatctaaaaatacattcggctagctaaaaatgaagcaaacaatgcagttaatatcccaccccgaaatacagtgatttatcaggtactacccatgca |
115 |
Q |
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| T |
4568423 |
gggccatctaaaaatacattcggctagctaaaaatgaagcaaacaatgcagttaatatcccaccccgaaatacagtgatttatcaggtactacccatgca |
4568324 |
T |
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| Q |
116 |
aaccccataagttaagtattcaaattggtaggggtagaaagaagacatgttgtggttaataaagttgagcgaggaggacttgtgagtgaggaagaggaga |
215 |
Q |
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| T |
4568323 |
aaccccataagttaagtattcaaattggcaggggtagaaagaagacatgttgtggttaataaagttgagcgaggaggacttgtgagtgaggaagaggaga |
4568224 |
T |
|
| Q |
216 |
aggatacgaagaaaaatgaaatcgaggatgaaagtgaacaggaatatccaagtgaagaacatagcgaggaggaagacccacttatgaaggtgtaaatcaa |
315 |
Q |
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| T |
4568223 |
aggatacgaagaaaaatgaaatcgaggatgaaagtgaacaggaatatccaagtgaagaacatagcgaggaggaagacccacttatgaaggtgtaaatcaa |
4568124 |
T |
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| Q |
316 |
ttctaagggagaaaaaatggcaacaaaaaatctaatgaatgaaatggagaatatgaaggagaaagataatacaacggtggaagaagaaaatttccaacaa |
415 |
Q |
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| T |
4568123 |
ttctaagggagaaaaaatggcaacaaaaaatctaatgaatgaaatggagaatatgaaggagaaagataatacaacggtggaagaagaaaatttccaacaa |
4568024 |
T |
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| Q |
416 |
ctattgaaagtattgtcaaagcttaagattaaaat |
450 |
Q |
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| T |
4568023 |
ctattgaaagtattgtcaaagcttaatattaaaat |
4567989 |
T |
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