View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_18 (Length: 447)
Name: NF21284_high_18
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 43614851 - 43614430
Alignment:
| Q |
19 |
ttaaaaatatagagtgaatgttggtagcacatgattcaagtacacttttcttttccaatcatgaaattaaaatttttaaataagagttttgttggaaata |
118 |
Q |
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| T |
43614851 |
ttaaaaatatagagtgaatgttggtagcacatgattcaagtatacttttcttttccaatcatgaaattaaaatttttaaataagagttttgttggaaata |
43614752 |
T |
|
| Q |
119 |
attaatgagttcactacaattctgacattgagttgaataagaaactgtatatgaaatgaaattgactttgaaaactaataataataaattaataattttt |
218 |
Q |
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| T |
43614751 |
attaatgagttcactacaattctgacattgagttgaataagaaactgtatatgaaatgaaattgactttgaaaactaataataataaattaataactttt |
43614652 |
T |
|
| Q |
219 |
cagtggcgacccaacaatgtacgaacgttattggcgacaaatgggagacaagaccacaataataataccaggatggcaatctatgagttatttttctgat |
318 |
Q |
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| T |
43614651 |
cagtggcgacccaacaatgtacgaacgttattggcgacaaatgggagacaagaccacaataataataccaggatggcaatctatgagttatttttctgat |
43614552 |
T |
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| Q |
319 |
ccaacaagcatttgttggtttcttgagccagaactttcaaaggaagtagtgaggttacataatgtggttggaaatgcagtaacacaaggtcgacacgttg |
418 |
Q |
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| T |
43614551 |
ccaacaagcatttgttggtttcttgagccagaattttcaaaggaagtagtgaggttacataatgtggttggaaatgcagtaacacaaggtcgacacgttg |
43614452 |
T |
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| Q |
419 |
ttgttggaacaggttcatctca |
440 |
Q |
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| T |
43614451 |
ttgttggaacaggttcatctca |
43614430 |
T |
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Back To:
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 440
Target Start/End: Complemental strand, 34688427 - 34688252
Alignment:
| Q |
265 |
gacaagaccacaataataataccaggatggcaatctatgagttatttttctgatccaacaagcatttgttggtttcttgagccagaactttcaaaggaag |
364 |
Q |
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||||||| ||| || |||||||||||||||||||| ||||| |||||||| ||| | | ||| ||||||||||||||| |||| || ||||||| | |
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| T |
34688427 |
gacaagagcacgatcataataccaggatggcaatccatgagctatttttcggatgtgtcgaacatatgttggtttcttgaggcagagtttgcaaaggagg |
34688328 |
T |
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| Q |
365 |
tagtgaggttacataatgtggttggaaatgcagtaacacaaggtcgacacgttgttgttggaacaggttcatctca |
440 |
Q |
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|||||||||| || | ||||| || |||||||| ||| |||| || ||| ||||||| || |||||||| ||||| |
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| T |
34688327 |
tagtgaggttgcacagagtggtcgggaatgcagtcacagaaggacgtcacattgttgtagggacaggttcctctca |
34688252 |
T |
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