View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_22 (Length: 439)
Name: NF21284_high_22
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 29312942 - 29313343
Alignment:
| Q |
11 |
cagagattgatttcgttggaggtgatttatgcacaggcaaagatgtacccagaaccacatgacaaa-gaatccatcgatgaaaatgcttttgcgtattat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
29312942 |
cagagattgatttcgttggaggtgatttatgcacagacaaagatgtacccagaaccacatgacaaaagaatccatcgatgaaaatgcttttgtgtattat |
29313041 |
T |
|
| Q |
110 |
acaaactataggattgagtatttttaattaattcgaaataatgtaatagcat-nnnnnnnntcgaaatagttcaataattttaatgataatcagttaatc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29313042 |
acaaactataggattgagtatttttaattaattcgaaataatgcaatagcataaaataaaatcgaaatagttcaataattttaatgataatcagttaatc |
29313141 |
T |
|
| Q |
209 |
aaatataatcaacaaaatttcaagatcaattaagtactcccgttattattctttacatgaaaataattctaatagcaaatatttatttaac-nnnnnnnt |
307 |
Q |
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| T |
29313142 |
aaatataatcaacaaaatttcaagatc----aagtactcccgttattattctttacatgaaaataattctaatagcaaatatttatttaacaaaaaaaat |
29313237 |
T |
|
| Q |
308 |
acccagttccccttaaaaatatatatccccggttcaaagttaattaagtagaccacctttattatttttaaaaaatgctaacattaataataggtaatta |
407 |
Q |
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| T |
29313238 |
acccagttccccttaaaaatatatatccccggttcaaagttaattaagtagaccacctttattatttttaaaatatgctaacattaataataggtaatta |
29313337 |
T |
|
| Q |
408 |
acatga |
413 |
Q |
| |
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|||||| |
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| T |
29313338 |
acatga |
29313343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 50259522 - 50259795
Alignment:
| Q |
12 |
agagattgatttcgttggaggtgatttatgcacaggcaaagatgtacccagaaccacatgacaaa-gaatccatcgatgaaaatgcttttgcgtattata |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || ||||||||||| |||||||| |
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| T |
50259522 |
agagattgatttcgttggaggtgatttatgcacaggcaaagatttacccagaaccacatgacaaaagaatccatcggtggaaatgcttttgtgtattata |
50259621 |
T |
|
| Q |
111 |
caaactataggattgagtatttttaattaattcgaaataatgtaatagcat-nnnnnnnntcgaaatagttcaataattttaatgataatcagttaatca |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
50259622 |
caaactataggattgagtatttttaattaattcgaaataatgcaatagcataaaaaaaaatcaaaatagttcaataatttcaatgataatcagttaatca |
50259721 |
T |
|
| Q |
210 |
aatataatcaacaaaatttcaagatcaattaagtactcccgttattattctttacatgaaaataattctaatag |
283 |
Q |
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| T |
50259722 |
aatataatcaacaaaatttcaagatcaattaagtactcccgttattattctttacatgaaaataattctaatag |
50259795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 50259793 - 50259844
Alignment:
| Q |
356 |
tagaccacctttattatttttaaaaaatgctaacattaataataggtaatta |
407 |
Q |
| |
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|
| T |
50259793 |
tagaccacctttattatttttaaaatatgctaacattaataataggtaatta |
50259844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 214 - 404
Target Start/End: Original strand, 44837138 - 44837328
Alignment:
| Q |
214 |
taatcaacaaaatttcaagatcaattaagtactcccgttattattctttacatgaaaataattctaatagcaaatatttatttaacnnnnnnntacccag |
313 |
Q |
| |
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||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44837138 |
taatcaagaaaatttcaagatcaattaagtattctcgttattattctttacatgaaaataattctaatagcaaatatttatttaacaaaaaaaataccag |
44837237 |
T |
|
| Q |
314 |
ttccccttaaaaatatatatccccggttcaaagttaattaagtagaccacctttattatttttaaaaaatgctaacattaataataggtaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44837238 |
ttccccttaaaaatatatatccccggttcaaagttaattaagtagaccacctttattatttttaaaatatgctaacattaataataggtaa |
44837328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 44836006 - 44836208
Alignment:
| Q |
11 |
cagagattgatttcgttggaggtgatttatgcacaggcaaagatgtacccagaaccacatgacaaa-gaatccatcgatgaaaatgcttttgcgtattat |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | || ||||||||||| ||||||| |
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| T |
44836006 |
cagagattgatttcgttggaggtgatttatgcacaa-caaagatgtacccagaaccacatgacaaaagaatccattggtggaaatgcttttgtgtattat |
44836104 |
T |
|
| Q |
110 |
acaaactataggattgagtatttttaattaattcgaaataatgtaatagcatnnnnnnnntcgaaatagttcaataattttaatgataatcagttaatca |
209 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |||||||||| |||||||| |
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| T |
44836105 |
acaaactataggtttgagtatttttaattaattcgaaataatgcaatagcataaaaaaatt-gaaatagttcaataatttcaatgataatcggttaatca |
44836203 |
T |
|
| Q |
210 |
aatat |
214 |
Q |
| |
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||||| |
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|
| T |
44836204 |
aatat |
44836208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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