View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_31 (Length: 354)
Name: NF21284_high_31
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 346
Target Start/End: Complemental strand, 47075030 - 47074685
Alignment:
| Q |
15 |
aatttctttctctatgcaggataatccgttacttattgagtgttttgatttcaatagcagtggaaatcatgtacttatagggtaatgtcaaattatatag |
114 |
Q |
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| T |
47075030 |
aatttctttctctatgcaggataatccgttacttattgagtgttttgatttcaatagcagtggaaatcatgcacttatagggtaatgtcaaattatatag |
47074931 |
T |
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| Q |
115 |
ctttttgtttagcctaaacttctttaggctttacactttctag--------------atgcaaaatagtgacatcaatgtttgttggcaacagtaaactg |
200 |
Q |
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| T |
47074930 |
ctttttgtttagcctaaacttctttaggctttacactttctagttcatactttatagatgcaaaatagtgacatcaatgtttgttggcaacagtaaactg |
47074831 |
T |
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| Q |
201 |
caaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcgatcaacacgcaatggacaagagaaggtattcattg |
300 |
Q |
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| T |
47074830 |
caaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcgatccacacgcaatggacaagagaaggtattcattg |
47074731 |
T |
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| Q |
301 |
gtccctgaaatcgaatttgtgttatattttggatttgatctctgct |
346 |
Q |
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| T |
47074730 |
gtccctgaaatcgaatttgtgttatattttggatttgatctctgct |
47074685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 47056896 - 47056763
Alignment:
| Q |
167 |
agtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcga |
266 |
Q |
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| T |
47056896 |
agtgacatcaaagtttgttgccatcagtaaaatgcagaaaacaatagcagaccttgaaaagctatgcaatgagagaaaaggtgtgaattttgtcatgcca |
47056797 |
T |
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| Q |
267 |
tcaacacgcaatggacaagagaaggtattcattg |
300 |
Q |
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| T |
47056796 |
tccaaacgcaaaggacaagagaaggtgttcattg |
47056763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 47057031 - 47056945
Alignment:
| Q |
25 |
tctatgcaggataatccgttacttattgagtgttttgatttcaatagcagtggaaatcatgtacttatagggtaatgtcaaattata |
111 |
Q |
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| T |
47057031 |
tctatgcaggatactccattagttatcgagtgttttgatttcaatatcagcggcaatcatgtactaatcgggtaatgtcaaattata |
47056945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 18230368 - 18230687
Alignment:
| Q |
15 |
aatttctttctctatgcaggataatccgttacttattgagtgttttgatttcaatagcagtggaaatcatgtacttatagggtaatgtcaaattatatag |
114 |
Q |
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||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| | |
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| T |
18230368 |
aatttctttctctatgcaggatactccattgcttattgagtgttttgatttcaatagcagcggcaatcatgtacttatcgggtaatgtcaaattatattg |
18230467 |
T |
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| Q |
115 |
cttttt----gtttagcctaaacttctttaggctttacactttctag------------------atgcaaaatagtgacatcaatgtttgttggcaaca |
192 |
Q |
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| T |
18230468 |
ttttattttcgtttagcctaaacatttttaggctttacactttctagtccatatactatatatagatgcaaaatactgacatcaaagtttgttgccgaca |
18230567 |
T |
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| Q |
193 |
gtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcgatcaacacgcaatggacaagagaaggt |
292 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
18230568 |
gtaaactgaaaaaatcagtagcagaccttgaaaagctataccaagaaaaaaaaggcgcaaattttgtcatgccatccacacgcaatggacaagagaaggt |
18230667 |
T |
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| Q |
293 |
attcattggtccctgaaatc |
312 |
Q |
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||||||| |||||| |||| |
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| T |
18230668 |
gttcattgatccctgcaatc |
18230687 |
T |
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