View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21284_high_37 (Length: 335)
Name: NF21284_high_37
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 16481729 - 16481426
Alignment:
| Q |
19 |
gggaagaacaaaagaaagatttcttttcaacaaa---ttgatgttggcaacaatattataactaatggtagacatatgtatcctcattcagattattatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16481729 |
gggaagaacaaaagaaagatttcttttcaacaaacaattgatgttggcaacaatattataacgaatggtagacatatgtatcctcattcagattattatg |
16481630 |
T |
|
| Q |
116 |
aacttggcggagatgaattcaagaggtttattcagcataagacgggaaatgaatcaaatgtattaaggccatccgttccggttcaggtttcggctccaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16481629 |
aacttggcggagatgaattcaagaggtttattcagcataagacgggaaataaatcaaatgtattaaggccatcagttccggttcaggtttcggctccaag |
16481530 |
T |
|
| Q |
216 |
atctccttcacaagcgctatacaatgcacttccagcacatcttgtgcagcctattaccggtaaccttcgtgttgacaattcacatagtaatcttattaag |
315 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
16481529 |
acctccttcacaagcgctatacaatgcacttccagcacatcttgtgcagcctatcaccggtaaccttcttgttgacaattcgcatagtaatcttgttaag |
16481430 |
T |
|
| Q |
316 |
tttc |
319 |
Q |
| |
|
|||| |
|
|
| T |
16481429 |
tttc |
16481426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 17631058 - 17631357
Alignment:
| Q |
20 |
ggaagaacaaaagaaagatttcttttcaacaaattgatgttggcaacaatattataactaatggtagacatatgtatcctcattcagattattatgaact |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||| ||| |||||||| |||| |||| | || | ||||||||||||||| ||||||| | |
|
|
| T |
17631058 |
ggaagaacaaaagaaagatttcctttcaacaaacatctgatggaaacgatattatacctaacggtaaatatctctatcctcattcagatcattatgaggt |
17631157 |
T |
|
| Q |
120 |
tggcggagatgaattcaagaggtttattcagcataagacgggaaatgaatcaaatgtattaaggccatccgttccggttcaggtttcggctccaagatct |
219 |
Q |
| |
|
| || ||||||||||||||| ||| ||||||| | ||||||||| ||||||||| |||||||||| | | ||| ||||||||||||||||||| || |
|
|
| T |
17631158 |
tcacgaagatgaattcaagagttttgttcagcacattacgggaaataaatcaaatgcattaaggccaccagatccagttcaggtttcggctccaacccct |
17631257 |
T |
|
| Q |
220 |
ccttcacaagcgctatacaatgcacttccagcacatcttgtgcagcctattaccggtaaccttcgtgttgacaattcacatagtaatcttattaagtttc |
319 |
Q |
| |
|
|| ||||| |||| |||||||||| |||||| ||||| ||||||||||||||| ||||| | || |||||||||| ||| ||||||||| || |||||| |
|
|
| T |
17631258 |
ccctcacaggcgcaatacaatgcaattccagtacatcctgtgcagcctattactggtaatcctcttgttgacaatccacggagtaatcttgttgagtttc |
17631357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 26 - 319
Target Start/End: Original strand, 17604478 - 17604774
Alignment:
| Q |
26 |
acaaaagaaagatttcttttcaacaaa---ttgatgttggcaacaatattataactaatggtagacatatgtatcctcattcagattattatgaacttgg |
122 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||| ||| |||||||||||| ||| ||||||||| | |||||| ||||||||| ||| | || |
|
|
| T |
17604478 |
acaaaagaaatatttcttttcagcaaacaattgattttgaaaacaatattatatctagcggtagacatctatatccttattcagatttttacgtggttca |
17604577 |
T |
|
| Q |
123 |
cggagatgaattcaagaggtttattcagcataagacgggaaatgaatcaaatgtattaaggccatccgttccggttcaggtttcggctccaagatctcct |
222 |
Q |
| |
|
|| ||||||||||||||| ||| ||||||||| |||||||| ||||||||||| |||| ||| | |||| |||| |||| ||||||| | ||||| |
|
|
| T |
17604578 |
cgaagatgaattcaagagttttgttcagcatattacgggaaagaaatcaaatgtagtaagaccaccaattcctattcatgttttggctccagtacctcct |
17604677 |
T |
|
| Q |
223 |
tcacaagcgctatacaatgcacttccagcacatcttgtgcagcctattaccggtaaccttcgtgttgacaattcacatagtaatcttattaagtttc |
319 |
Q |
| |
|
||||| || ||||||||||||||||||| | ||| | ||||||||||||||||||| | || |||||| |||||||| |||||| || || |||||| |
|
|
| T |
17604678 |
tcacaggctctatacaatgcacttccagtatatcctatgcagcctattaccggtaatcatcttgttgaaaattcacaaagtaatattgttgagtttc |
17604774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 18766171 - 18766259
Alignment:
| Q |
19 |
gggaagaacaaaagaaagatttcttttcaaca---aattgatgttggcaacaatattataactaatggtagacatatgtatcctcattc |
104 |
Q |
| |
|
|||||||||| | || ||| |||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||| |||||| |||| |
|
|
| T |
18766171 |
gggaagaacacaggagagaattcttttcaacacaaaattgattttgacaatgatattataactattggtagacatatatatccttattc |
18766259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University