View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_39 (Length: 324)
Name: NF21284_high_39
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 3332157 - 3331862
Alignment:
| Q |
18 |
gctggaaataaacaggaggctggccaggtaagttagtcacaagatcatcattatcaccatagcttaatttcctatctttagaagaaacaataggattcac |
117 |
Q |
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| T |
3332157 |
gctggaaataaacaggaggctggccaggtaagttagtcacaagatcatcattatcaccatagcttaatttcctatctttagaagaaacaataggattcac |
3332058 |
T |
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| Q |
118 |
atgtaaaaacaacactatcaaagccaatgtgtagaaacttgtcatattatccaaagttttacttgatggacaaagagaaatactacatacctatttatac |
217 |
Q |
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| T |
3332057 |
atgtaaaaacaacactatcaaagccaatgtgtagaaacttgtcatattatccaaagttttacttgatggacaaagagaaatactacatacctatttatac |
3331958 |
T |
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| Q |
218 |
taatctaggactactatttaatggtccatcatagggtaaaaatttattaaaaagcagataggattagagagtcctacctggcaacatcttcatctc |
313 |
Q |
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| T |
3331957 |
taatctaggactactatttaatggtccatcatagggtaaaaattaatgaaaaagcagataggattagagagtcctacctggcaacatctttatctc |
3331862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 3338421 - 3338349
Alignment:
| Q |
83 |
aatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaac |
155 |
Q |
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|||||| ||||| ||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
3338421 |
aatttcttatctctagaagaaacaatagtattcatacataaaaacaatactatcaaagccaatgtgtagaaac |
3338349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 3338489 - 3338446
Alignment:
| Q |
33 |
gaggctggccaggtaagttagtcacaagatcatcattatcacca |
76 |
Q |
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|||||||||| ||||||||||||||||||||| | ||||||||| |
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| T |
3338489 |
gaggctggcctggtaagttagtcacaagatcacccttatcacca |
3338446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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