View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_42 (Length: 319)
Name: NF21284_high_42
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 40228011 - 40227765
Alignment:
| Q |
1 |
tgatagagatagcaaagatggctaattaaatatggattttacatataaatatatggattttctttatattttaattttagccaaactttgacattgcaaa |
100 |
Q |
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| T |
40228011 |
tgatatagatagcaaagatggctaattaaatatggattttacatataaataaatggattttctttatattttaattttagccaaactttgaccttgcaaa |
40227912 |
T |
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| Q |
101 |
caaacttggcacgtgttgaacccaaatcttaggaaattcacgtagctaggtgtgagtgagatcatcactaattttacaatacaaactctactttttctct |
200 |
Q |
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| T |
40227911 |
caaacttggcacgtgttgaacccaaatcttaggaaattcacgtagctaggtgtgagtgagatcatcactaattttacaatacaaactctactttttctct |
40227812 |
T |
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| Q |
201 |
tgaaaatatttttagttacagtgaattagcttctcctctagccatgg |
247 |
Q |
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| T |
40227811 |
tgaaaatatttttagttacagtgaattagcttctcctctagccatgg |
40227765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 40227735 - 40227689
Alignment:
| Q |
257 |
ctttcatgttaaatatgtgtatatccttttttattcttgatccttca |
303 |
Q |
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| T |
40227735 |
ctttcatgttaaatatgtgtatatccttttttattcttgatccttca |
40227689 |
T |
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