View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_45 (Length: 313)
Name: NF21284_high_45
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 48964171 - 48964451
Alignment:
| Q |
18 |
cttcataaatacacatatttttctttttaattggactgttcattcctgtcattaaatcctacaatgtattcaatctaatcgaagacactgctgcataacc |
117 |
Q |
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| T |
48964171 |
cttcataaatacaaatatttttctttttaattggactgttcattcctgtccttaaatcctacaatgtattcaatctaatcgaagacactgctgcataacc |
48964270 |
T |
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| Q |
118 |
ttctacaaccattcagaatgatattgcttcttccctttccggttgcctttnnnnnnncgaacctcacttacttatgacttgtaatctgaatcattggcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48964271 |
ttctacaaccattcagaatgatattgcttcttccctttccagttgcctttaaaaaaacgaacctcacttacttatgacttgtaatctgaatcattggcac |
48964370 |
T |
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| Q |
218 |
ctat-aaaaaatgttcatttttataccatcttagagaaaaatgaaccattaatgatttgtcttggcaattttaggggttat |
297 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48964371 |
ctataaaaaaatgttcatttttataccatcttagagaaaaatgaaccattaatgatttgtcttggcaattttaggggttat |
48964451 |
T |
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