View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_46 (Length: 312)
Name: NF21284_high_46
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 10255953 - 10256237
Alignment:
| Q |
18 |
gtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttca |
117 |
Q |
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| T |
10255953 |
gtaggttgtatggagagggttgttatggtggtgagccgtttttcgtggcgagggaggatggtgaagaagaggatgatggttatttagtgagttatgtgca |
10256052 |
T |
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| Q |
118 |
tgatgagaagaagggagagtctaagtttttggtgatggatgctaagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttat |
217 |
Q |
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| T |
10256053 |
tgatgagaaaaagggagagtctaagtttttggtgatggatgctaagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttat |
10256152 |
T |
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| Q |
218 |
ggttttcatggattgtttgtgaaagagagtgacatcaccaagttgtcggtgtcgtagggatgaagacatagttctcttgtctctg |
302 |
Q |
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| T |
10256153 |
ggttttcatggattgtttgtgaaagagagtgacatcaccaagttgtcggtgtcgtagggatgaagacatagttcttttgtctctg |
10256237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 10238655 - 10238406
Alignment:
| Q |
18 |
gtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttca |
117 |
Q |
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| T |
10238655 |
gtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggctagggaagatggtgaggaagaggatgatggttatttagtgagttatgtgca |
10238556 |
T |
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| Q |
118 |
tgatgagaagaagggagagtctaagtttttggtgatggatgctaagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttat |
217 |
Q |
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| T |
10238555 |
tgatgagaagaagggagagtcaaggtttttggtgatggatgctaagtctccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttat |
10238456 |
T |
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| Q |
218 |
ggttttcatggattgtttgtgaaagagagtgacatcaccaagttgtcggt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
10238455 |
ggttttcatggattgtttgtgaaagagagtgacatcacgaggttgtcggt |
10238406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 10229875 - 10229616
Alignment:
| Q |
18 |
gtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttca |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||||||||||||||||||| || |
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| T |
10229875 |
gtaggttgtatggagagggttgttatggtggtgagccgtttttcgtggcgatggaaggtggtgaggaagaggatgatggttatttagtgagttatgtgca |
10229776 |
T |
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| Q |
118 |
tgatgagaagaagggagagtctaagtttttggtgatggatgctaagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttat |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||| |
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| T |
10229775 |
tgatgagaagaagggagaatctaagtttttggtgatggatgcgaagtcgccagagtttgagattgtggcggaggtgaagttgccgaggagggtgccctat |
10229676 |
T |
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| Q |
218 |
ggttttcatggattgtttgtgaaagagagtgacatcaccaagttgtcggtgtcgtaggga |
277 |
Q |
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||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
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| T |
10229675 |
ggttttcatggattgtttgtgaagcaaagtgacataaccaagttgtcggtgtcgtaggga |
10229616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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