View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_5 (Length: 719)
Name: NF21284_high_5
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 3e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 129 - 388
Target Start/End: Original strand, 8191128 - 8191387
Alignment:
| Q |
129 |
agactctgagcaaaattgcctgtaatcggctccagaaagaactcgtcgagtggcaggttaatccaccaactggtttcaaacacagagtcaccgacaatct |
228 |
Q |
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| T |
8191128 |
agactctgagcaaaattgcctgtaatcggctccagaaagaactcgtcgaatggcaggttaatccaccaactggtttcaaacacagagtcaccgacaatct |
8191227 |
T |
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| Q |
229 |
ccaaaggtatcatcagattcttctaattcacccactcaattttcaattcccacnnnnnnnnnntcagnnnnnnnatccgtttttgagtttaatagtttat |
328 |
Q |
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| T |
8191228 |
ccaaaggtatcatcagattcttctaattcacccactcaattttcaattcccacaaaaaaaaaatcagtttttttatccgtttttgagtttaatagtttat |
8191327 |
T |
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| Q |
329 |
aattcttaatgggttgcctcnnnnnnnnnnnntttctaaatgggtcgttcaaagttgttg |
388 |
Q |
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| T |
8191328 |
aattcttaatgggttgcctcaaaaaagaaaaatttctaaatgggtcgttcaaagttgttg |
8191387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 444 - 611
Target Start/End: Original strand, 8191444 - 8191611
Alignment:
| Q |
444 |
gtggaaggtgggttattgaagtgggtggagctcctgggacactgtactccaatgagacctatcagcttcaggtggattttcctgagaattacccgatgga |
543 |
Q |
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| T |
8191444 |
gtggaaggtgggttattgaagtgggtggagctcctgggacactgtactccaatgagacctatcagcttcaggtggattttcctgagaattacccgatgga |
8191543 |
T |
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| Q |
544 |
agctccacaggttcttattttgatttttatgcacatgttttggtgtccacttatgtaattatgttttg |
611 |
Q |
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| T |
8191544 |
agctccacaggttcttattttgatttttatgcacatgttttggtgtccacttatgtaattatgttttg |
8191611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 8191017 - 8191053
Alignment:
| Q |
18 |
agttcttcagctgcatctcgcaaggtaaatccctaac |
54 |
Q |
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| T |
8191017 |
agttcttcagctgcatctcgcaaggtaaatccctaac |
8191053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 448 - 555
Target Start/End: Complemental strand, 32409358 - 32409251
Alignment:
| Q |
448 |
aaggtgggttattgaagtgggtggagctcctgggacactgtactccaatgagacctatcagcttcaggtggattttcctgagaattacccgatggaagct |
547 |
Q |
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| T |
32409358 |
aaggtgggttattgaagtgattggagctcctgggacactttatgctaatgagacctacaagcttcaggtcgatttcccggagcactacccaatggaagct |
32409259 |
T |
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| Q |
548 |
ccacaggt |
555 |
Q |
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| T |
32409258 |
ccacaggt |
32409251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 32410243 - 32410148
Alignment:
| Q |
143 |
attgcctgtaatcggctccagaaagaactcgtcgagtggcaggttaatccaccaactggtttcaaacacagagtcaccgacaatctccaaaggtat |
238 |
Q |
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||||||| ||| |||| |||||||| ||||| || |||||| ||||||| || |||||||||| ||| ||||| ||| ||||||||||||||| |
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| T |
32410243 |
attgcctccaataggcttcagaaagagctcgttgaatggcagattaatcctcctgctggtttcaactacaaagtcagcgataatctccaaaggtat |
32410148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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