View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21284_high_58 (Length: 264)
Name: NF21284_high_58
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 29249981 - 29250222
Alignment:
| Q |
18 |
attccccacccaatttttagagccaactacgttggacatttgaactaactcatgagcaacagcaa-tcttggataattggatcaaatacagccattatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
29249981 |
attccccacccaatttttagagccaactatgttggacatttgaactaactcatgagcaacagcaaatcttggataattggatcaactgcagccattatag |
29250080 |
T |
|
| Q |
117 |
ccttgacattgatacaatccacaacagcagctgcattggactccaccaccaccttgtttaaacacaaatattttgcaactgagagacaccatctcaaacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29250081 |
ccttgacattgatacaatccacaacagcagctgcattgaactccaccaccaccttgtttaaacacaaatattttgcaactgagagacaccatctcaaacc |
29250180 |
T |
|
| Q |
217 |
aagtgcctccgccaacataggactcaaatccacttcttctct |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29250181 |
aagtgcctccgccaacataggactcaaatccacttcttctct |
29250222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 31438910 - 31438727
Alignment:
| Q |
75 |
aacagcaatcttggataattggatcaaatacagccattatagccttgacattgatacaatccacaacagcagctgcattggactccaccaccaccttgtt |
174 |
Q |
| |
|
|||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||| || |
|
|
| T |
31438910 |
aacaacaatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaacagtagcagcatcagactccaccaccaccttatt |
31438811 |
T |
|
| Q |
175 |
taaacacaaatattttgcaactgagagacaccatctcaaaccaagtgcctccgccaacataggactcaaatccacttcttctct |
258 |
Q |
| |
|
||| | ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
31438810 |
taatcgcaaatcttttgcaactgagagacaccacctcaaaccaagtgcctctgtcaacataggactcaactccacttcttctct |
31438727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 31197081 - 31196901
Alignment:
| Q |
78 |
agcaatcttggataattggatcaaatacagccattatagccttgacattgatacaatccacaacagcagctgcattggactccaccaccaccttgtttaa |
177 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
31197081 |
agcaatcttggataattggatcaattgcagccattatagccttgccattgatacaatccacaacagtagcatcatcggactccaccaccaccttgtttaa |
31196982 |
T |
|
| Q |
178 |
acacaaatattttgcaactgagagacaccatctcaaaccaagtgcctccgccaacataggactcaaatccacttcttctct |
258 |
Q |
| |
|
| ||| | |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
31196981 |
aggcaagtcttttgcaactaagagacaccatctcaaaccaagtgcctttgccaacataagactcaactccacttcttctct |
31196901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 31439027 - 31438969
Alignment:
| Q |
20 |
tccccacccaatttttagagccaactacgttggacatttgaactaactcatgagcaaca |
78 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31439027 |
tccccacccaatttttagagccaactactttggacatttgaactaactcatgagcaaca |
31438969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 31197195 - 31197150
Alignment:
| Q |
23 |
ccacccaatttttagagccaactacgttggacatttgaactaactc |
68 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31197195 |
ccacccaatttttagagccaactactgtggacatttgaactaactc |
31197150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 28767914 - 28767855
Alignment:
| Q |
19 |
ttccccacccaatttttagagccaactacgttggacatttgaactaactcatgagcaaca |
78 |
Q |
| |
|
||||||||||||||||| | |||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
28767914 |
ttccccacccaattttttgtgccaactattttgggcatttgaactaactcatcagcaaca |
28767855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University