View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21284_high_65 (Length: 247)
Name: NF21284_high_65
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_65 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 23934185 - 23934426
Alignment:
| Q |
9 |
atgaatgaacaaataatctcggttgcataattcgacagtaacaaccaacagaactataaactttgacaaatttgtgtataagcttctaataatgctagga |
108 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23934185 |
atgaatgaacaaataatctcgattgcataattcgacagtaacaacgaacagaactataaactttgacaaatttgtgtataagcttctaataatgctagga |
23934284 |
T |
|
| Q |
109 |
atattatatcatcattccaaattattgttacacaaatatgacattaaacactgttgtattaaac---aactattttctccatcgagcagtatatagatac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
23934285 |
atattatatcatcattccaaattattgtcacacaaatatgacattaaacactgttgtattaaacttaaactattttctccgtcgagcagtatatagatac |
23934384 |
T |
|
| Q |
206 |
atacatgccgtaaaacagtaatcaagaaactagtaatacata |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23934385 |
atacatgccgtaaaacagtaatcaagaaactagtaatacata |
23934426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University