View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_67 (Length: 246)
Name: NF21284_high_67
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 51739357 - 51739124
Alignment:
| Q |
1 |
caatgcaatcaatgcattaataattgaaaacttcaatgtaaa-taaataatgtaga---atgaaacaataactaatcaattaccagaatttgtgcaacgg |
96 |
Q |
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| T |
51739357 |
caatgcaatcaatgcattaataattgaaaacttcaattcaatgtaaataatgtagattaatgaaacaataactaatcaattaccagaatttgtgcaacgg |
51739258 |
T |
|
| Q |
97 |
gtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgcccattgagtatagagggttaactag |
196 |
Q |
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| T |
51739257 |
gtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgcccattgagtatagagggttaactag |
51739158 |
T |
|
| Q |
197 |
ttctttattacaaaacattttgtgtgtggcatcc |
230 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
51739157 |
ttctttattacaaaacattttgtgggtggcatcc |
51739124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 10199709 - 10199570
Alignment:
| Q |
75 |
attaccagaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgccca |
174 |
Q |
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||||||||||||||||||| |||||||||||| || | |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
10199709 |
attaccagaatttgtgcaatgggtccaggttggcccatagtcctaagaacaacgttgaagaagtgtgacacaacaagaatgcatgacacttgcataccca |
10199610 |
T |
|
| Q |
175 |
ttgagtatagagggttaactagttctttattacaaaacat |
214 |
Q |
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| T |
10199609 |
tagaacttagagggttaacaagatcatcgttacaaaacat |
10199570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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