View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_71 (Length: 236)
Name: NF21284_high_71
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34776897 - 34777117
Alignment:
| Q |
1 |
actatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaat |
100 |
Q |
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| T |
34776897 |
actatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaat |
34776996 |
T |
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| Q |
101 |
tacccccatttctggcttcaagtcactcatcgaagtttatccttgatcctgaagttgctgcaatgttataaattccgaattaataattttcgattcagag |
200 |
Q |
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| T |
34776997 |
tacccccatttctggcttcaagtcactcatcgaagtttatccttgatcctgaagttgctgcaaagttataaattccgaattaataagtttcgattcagag |
34777096 |
T |
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| Q |
201 |
agtcaagttaatagtatttat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34777097 |
agtcaagttaatagtatttat |
34777117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 34785065 - 34785206
Alignment:
| Q |
3 |
tatgatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaatta |
102 |
Q |
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| T |
34785065 |
tatgatttggtgatgcttacaatgttccttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaatta |
34785164 |
T |
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| Q |
103 |
cccccatttctggcttcaagtcactcatcgaagtttatcctt |
144 |
Q |
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| T |
34785165 |
cccccatttctggcttcaagtctctcgttgaagtttatcctt |
34785206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 11467378 - 11467270
Alignment:
| Q |
36 |
aaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaag |
135 |
Q |
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| T |
11467378 |
aaagaaagagaaaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaag |
11467279 |
T |
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| Q |
136 |
tttatcctt |
144 |
Q |
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||||||||| |
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| T |
11467278 |
tttatcctt |
11467270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 11487821 - 11487927
Alignment:
| Q |
36 |
aaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaag |
135 |
Q |
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||||||||| |||| |||||||| | |||||||| ||||| || || || ||||||||||| ||||| || || | |||||||||||||||||| |||| |
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| T |
11487821 |
aaagaaagagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtcactcatagaag |
11487920 |
T |
|
| Q |
136 |
tttatcc |
142 |
Q |
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||||||| |
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| T |
11487921 |
tttatcc |
11487927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 11524495 - 11524603
Alignment:
| Q |
36 |
aaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaag |
135 |
Q |
| |
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||||||||| |||| |||||||| | |||||||| ||||| || || || ||||||||||| ||||| || || | |||||||||||| || || |||| |
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| T |
11524495 |
aaagaaagagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtctcttatagaag |
11524594 |
T |
|
| Q |
136 |
tttatcctt |
144 |
Q |
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||||||||| |
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|
| T |
11524595 |
tttatcctt |
11524603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 11508296 - 11508386
Alignment:
| Q |
52 |
aagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaagtttatcc |
142 |
Q |
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|||||||||| |||||||||| || |||||||| |||||||| || ||||| || || | || |||||||| ||||||||||| ||||| |
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| T |
11508296 |
aagaatgggagaaactcatattcgacgcaggtttcagcagctataagattacacctatatgcggtttcaagtctctcatcgaagtatatcc |
11508386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 11441594 - 11441502
Alignment:
| Q |
52 |
aagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaagtttatcctt |
144 |
Q |
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|||||||||| |||||||||| || ||||| || |||||||| || ||||| || || | |||||||| || |||||||||||||||||| |
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| T |
11441594 |
aagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatcctt |
11441502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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