View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_75 (Length: 234)
Name: NF21284_high_75
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_75 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 37851695 - 37851563
Alignment:
| Q |
84 |
atatatataaagtggagttgcatgtatttgttctccatgtggataaaaagaaatatacccctacacaaaacacacaattacatgacgtgttaatgatatt |
183 |
Q |
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| T |
37851695 |
atatatataaagtggagttgcatgtatttgttctccatgtggataaaaagaaatatacccctacacaaaacacacaattacatgacgtgttaatgatatt |
37851596 |
T |
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| Q |
184 |
aaggaagacgccatccacacattgagaaatcaa |
216 |
Q |
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| T |
37851595 |
aaggaagacgccatccacacattgagaaatcaa |
37851563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 37851796 - 37851717
Alignment:
| Q |
16 |
aatatttagtatacaaaagaatattttccattaaa---tattggctgagaaccctaataaatagcagctagatatatata |
92 |
Q |
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| T |
37851796 |
aatatttagtatacaaaagaatattttccattaaatattattggctgagaaccctaataaatagcagctatatatatata |
37851717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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