View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_77 (Length: 231)
Name: NF21284_high_77
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_77 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 54980556 - 54980372
Alignment:
| Q |
31 |
cttatacaaagtaagactagttagtttcttaaattttcctataccttctggcatgtgaccgaaaattttattcgaacttaactgaatcaataccaaagaa |
130 |
Q |
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| T |
54980556 |
cttatacaaagtaagactagttagtttcttcaattttcctataccttctggcatgtgaccgaaaattttattcgaacttaactgaatcaataccgaagaa |
54980457 |
T |
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| Q |
131 |
gacgcttctgagatttccaaaggtaactcagctgagaatttattccaagttgagtttttctacacaataacaacatgttccacag |
215 |
Q |
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| T |
54980456 |
gaagcttctgagatttccaaaggtaactcagctgagaatttattccaagttgagtttttctacacaataacaacatgttccacag |
54980372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 2398939 - 2398801
Alignment:
| Q |
32 |
ttatacaaagtaagactagttagtttcttaaattttcctataccttctggcatgtgaccgaaaattttattcgaacttaactgaatcaataccaaagaag |
131 |
Q |
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|||| |||||||||||||||||||||||| ||||| |||||| ||| || ||||||||| ||||| ||||||||||||||||||| | ||||||||| |
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| T |
2398939 |
ttattcaaagtaagactagttagtttcttcaatttgcctatagtttccggtatgtgaccggaaattctattcgaacttaactgaattgaaaccaaagaac |
2398840 |
T |
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| Q |
132 |
acgcttctgagatttccaaaggtaactcagctgagaatt |
170 |
Q |
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| T |
2398839 |
tagcttctgagatttccattggtaactcacctgagaatt |
2398801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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