View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_high_82 (Length: 207)
Name: NF21284_high_82
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_high_82 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 42816712 - 42816888
Alignment:
| Q |
16 |
aagaataagctatttttctttgaaggttcatcttatacctttgaccttgaggatttactaaaggcctcagctgaagttcttggaaaagggagctatggta |
115 |
Q |
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| T |
42816712 |
aagaacaagctatttttctttgaaggttcatcttatacctttgaccttgaggatttactaaaggcctcagctgaagttcttggaaaagggagctatggta |
42816811 |
T |
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| Q |
116 |
cagcatacaaggctgttttggaggagggagtgacaatggtagttaaaaggttgaaggaagttatggtaggaaagaag |
192 |
Q |
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| T |
42816812 |
cagcatacaaggctgttttggaggagggagtgacaatggtagttaaaaggttgaaggaagttatggtaggaaagaag |
42816888 |
T |
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Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 28841216 - 28841377
Alignment:
| Q |
31 |
ttctttgaaggttcatcttatacctttgaccttgaggatttactaaaggcctcagctgaagttcttggaaaagggagctatggtacagcatacaaggctg |
130 |
Q |
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| T |
28841216 |
ttctttgagggttgttcttatagttttgaccttgaagacttgttgaaggcttcagctgaagtacttggaaaaggaagctatggaacaacatacaaggcta |
28841315 |
T |
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| Q |
131 |
ttttggaggagggagtgacaatggtagttaaaaggttgaaggaagttatggtaggaaagaag |
192 |
Q |
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| T |
28841316 |
aattggaggaaggaatgacagttgtggttaaaaggttaagagaagttttggtcggaaagaag |
28841377 |
T |
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