View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21284_low_1 (Length: 967)
Name: NF21284_low_1
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_1 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 3e-97; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 45 - 327
Target Start/End: Complemental strand, 45858988 - 45858709
Alignment:
| Q |
45 |
atccaatagttacttacagctactgtcttgtcactaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcat |
144 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45858988 |
atccaatagttacttaccgctactgtcctgtcactaggtagacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcat |
45858889 |
T |
|
| Q |
145 |
ggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgatatacctcaagacagtcaggttgatttaagaacacctt |
244 |
Q |
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||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |||| || |
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| T |
45858888 |
ggtctggttgatgctattggtgggctatcacgtgctattgctatagccaaattgaaggccaatatacctcaagataatcaggttgatttcagaagac--- |
45858792 |
T |
|
| Q |
245 |
tattttgatgtctgttgatttatttgatgatttcatgattcctatcatgattgtccttgacctattccaggttaccgttgtgg |
327 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||||| |||| ||||||| | ||||||| |
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| T |
45858791 |
tattttgatgtctgttgatttatttgctgatttcatgattcctataatgatcgtgcttgagctatgccaggttgctgttgtgg |
45858709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 45876906 - 45876731
Alignment:
| Q |
58 |
ttacagctactgtcttgtcactaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatg |
157 |
Q |
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||||||||||| || ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
45876906 |
ttacagctactatcccgtcgctaggtagacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatg |
45876807 |
T |
|
| Q |
158 |
ctattggtgggttatctcgtgctattgctatagccaaactgaaggccgatatacctcaagacagtcaggttgattt |
233 |
Q |
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||||||||||| |||||||||||||||||||||| ||| |||| || |||||||||||||||| ||||||||||| |
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| T |
45876806 |
ctattggtgggctatctcgtgctattgctatagcaaaattgaaagctaatatacctcaagacagacaggttgattt |
45876731 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 56208670 - 56208539
Alignment:
| Q |
89 |
agatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctat |
188 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
56208670 |
agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat |
56208571 |
T |
|
| Q |
189 |
agccaaactgaaggccgatatacctcaagaca |
220 |
Q |
| |
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||| ||| ||||||| | |||||||||||||| |
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|
| T |
56208570 |
agcaaaattgaaggctggtatacctcaagaca |
56208539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 47293456 - 47293600
Alignment:
| Q |
83 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat |
182 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||| |
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| T |
47293456 |
tagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat |
47293555 |
T |
|
| Q |
183 |
tgctatagccaaactgaaggccgatatacctcaagacagtcaggt |
227 |
Q |
| |
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||||||||| ||| |||||||| ||||||||||| |||| ||||| |
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| T |
47293556 |
tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt |
47293600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 55705881 - 55706019
Alignment:
| Q |
83 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat |
182 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
55705881 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
55705980 |
T |
|
| Q |
183 |
tgctatagccaaactgaaggccgatatacctcaagacag |
221 |
Q |
| |
|
|||||| | ||| |||| || ||||||||||| |||| |
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|
| T |
55705981 |
tgctattacaaaattgaaagctaatatacctcaaaacag |
55706019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 54304249 - 54304357
Alignment:
| Q |
108 |
ggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgat |
207 |
Q |
| |
|
||||| ||||||||| |||||||| ||| ||||| |||||||||||||||||||| ||| | |||||||||||||||||||| ||| |||||||| || |
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| T |
54304249 |
ggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaat |
54304348 |
T |
|
| Q |
208 |
atacctcaa |
216 |
Q |
| |
|
||||||||| |
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|
| T |
54304349 |
atacctcaa |
54304357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 9e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 35854542 - 35854687
Alignment:
| Q |
83 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat |
182 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
35854542 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
35854641 |
T |
|
| Q |
183 |
tgctatagccaaactgaaggccgatatacctcaagacagtcaggtt |
228 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||| |||| |||||| |
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|
| T |
35854642 |
tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtt |
35854687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
| Q |
83 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgct |
159 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
35802580 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct |
35802504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 10521303 - 10521434
Alignment:
| Q |
85 |
gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg |
184 |
Q |
| |
|
||||||||| || || || |||| ||||| |||||| ||| ||||| |||| |||||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
10521303 |
gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg |
10521402 |
T |
|
| Q |
185 |
ctatagccaaactgaaggccgatatacctcaa |
216 |
Q |
| |
|
|||| || ||| | |||||| ||||||||||| |
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|
| T |
10521403 |
ctatcgcaaaattcaaggccaatatacctcaa |
10521434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 24357450 - 24357591
Alignment:
| Q |
78 |
ctaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgt |
177 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| |||||||||||||||||||||||||| | || || |
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|
| T |
24357450 |
ctaggtggacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccga |
24357549 |
T |
|
| Q |
178 |
gctattgctatagccaaactgaaggccgatatacctcaagac |
219 |
Q |
| |
|
|||||||| ||||| ||| |||||||| |||||||||||||| |
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|
| T |
24357550 |
gctattgccatagcaaaattgaaggccaatatacctcaagac |
24357591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 7972222 - 7972083
Alignment:
| Q |
82 |
gtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgcta |
181 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||| |||||||| |||| |||| ||||||| |
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|
| T |
7972222 |
gtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgcta |
7972123 |
T |
|
| Q |
182 |
ttgctatagccaaactgaaggccgatatacctcaagacag |
221 |
Q |
| |
|
|||||||||| ||| |||||||| || | |||||| |||| |
|
|
| T |
7972122 |
ttgctatagcaaaattgaaggccaatcttcctcaaaacag |
7972083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 7961851 - 7961718
Alignment:
| Q |
83 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat |
182 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||||| ||||| |||||| ||||| ||| |||||| |||||||||||||| |||| | ||||| |
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|
| T |
7961851 |
tagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctat |
7961752 |
T |
|
| Q |
183 |
tgctatagccaaactgaaggccgatatacctcaa |
216 |
Q |
| |
|
||||||||| ||| |||||||| |||| |||||| |
|
|
| T |
7961751 |
tgctatagcaaaattgaaggccaatattcctcaa |
7961718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 872 - 914
Target Start/End: Complemental strand, 299548 - 299506
Alignment:
| Q |
872 |
tttgaaggagaaaagttttcatgagtcacaaaccgaccatatc |
914 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
299548 |
tttgaagaagaagagttttcatgagtcactaaccgaccatatc |
299506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 708
Target Start/End: Complemental strand, 299780 - 299735
Alignment:
| Q |
663 |
aatcaaaactaatcctaatttaattttgaattcaaaatatagtaat |
708 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||||||||||| |
|
|
| T |
299780 |
aatcaaaataaatcctaatttaattttgatttaaaaatatagtaat |
299735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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