View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_10 (Length: 552)
Name: NF21284_low_10
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 17872827 - 17873174
Alignment:
| Q |
18 |
agttcttaccatcattttcaataatgctttttgataaccaataaatcagaattgttggttaaaatttaaaagaagagctagggtattggagctatagaat |
117 |
Q |
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| T |
17872827 |
agttcttaccatcattttcaataaagctttttgataaccaataaatcagaattgttggttaaaattttaaagaagagctaaggtattggagctatagaat |
17872926 |
T |
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| Q |
118 |
ttgaagatgaaaagagtgtatatgagatgaagttgggaagtgaagatgagaggtttctacaattcaatatatagatactaact----------agtcaag |
207 |
Q |
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| T |
17872927 |
ttgaagatgaaaaga--gtatatgagatgaagttgtgaagtgaagatgagaggtttgtacaatgcaatatatagatactaactagtcaactgaagtcaag |
17873024 |
T |
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| Q |
208 |
aaaagtagtgtggtccaatttaataattaaacgcggtaatagtatggtggggggtgttggttctttgtatcttcatcttggccccacacaaatgcttcca |
307 |
Q |
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| T |
17873025 |
aaaagtagtgtggtccactttaataattaaacgcggtaatagtatggtggggggtg-aggttctttgtatcttcatcttggccccacac---tccttcca |
17873120 |
T |
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| Q |
308 |
agaaagtgagacaatttatttatttatttttaaataaatgatattattcattca |
361 |
Q |
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| T |
17873121 |
agaaagtgagacaattaattaattaatttttaaataaatgatattattcattca |
17873174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 17862252 - 17862588
Alignment:
| Q |
18 |
agttcttaccatcattttcaataatgctttttgataaccaataaatcagaattgttggttaaaatttaaaagaagagctagggtattggagctatagaat |
117 |
Q |
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| T |
17862252 |
agttcttaccatcattttcaataaagctttttgataaccaataaatcagaattgttggttaaaattttaaagaagagctaaggtattggagctatagaa- |
17862350 |
T |
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| Q |
118 |
ttgaagatgaaaagagtgtatatgagatgaagttgggaagtgaagatgagaggtttctacaattcaatatatagatactaactagtcaa----------g |
207 |
Q |
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| T |
17862351 |
ttgttggttaaaa--------------ttaa-ttgtgaagtgaagatgagaggtttgtacaatgcaatatatagatactaactagtcaactgaagtcaag |
17862435 |
T |
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| Q |
208 |
aaaagtagtgtggtccaatttaataattaaacgcggtaatagtatggtggggggtgttggttctttgtatcttcatcttggccccacacaaatgcttcca |
307 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||| | |||||| |
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| T |
17862436 |
aaaagtagtgtggtccactttaataattaaacgcggtaatagtatggtggagggtgt-ggttctttgtatcttcattatggcctcacacaattccttcca |
17862534 |
T |
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| Q |
308 |
agaaagtgagacaatttatttatttatttttaaataaatgatattattcattca |
361 |
Q |
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| T |
17862535 |
agaaagtgagacaattaatttatttatttttaaataaatgatattatttattca |
17862588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 17862659 - 17862768
Alignment:
| Q |
432 |
caacattcatgtcaatagcatatattaacaaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgt |
531 |
Q |
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||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
17862659 |
caacaatcatgtcaataacatatatttacaaagtataaaagcctacaaatttgactatatttatatttatggaatatctatgtctctagatttataacgt |
17862758 |
T |
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| Q |
532 |
tgatgatgtc |
541 |
Q |
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|||| ||||| |
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| T |
17862759 |
tgattatgtc |
17862768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 458 - 541
Target Start/End: Original strand, 17874477 - 17874560
Alignment:
| Q |
458 |
aacaaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgttgatgatgtc |
541 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
17874477 |
aacaaagtataaaagcctacaaatttgactatatttaaatttatagaatatctatgtctccagatttacaacgttgatgatgtc |
17874560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 17875056 - 17875103
Alignment:
| Q |
314 |
tgagacaatttatttatttatttttaaataaatgatattattcattca |
361 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17875056 |
tgagacaattaatttatttatttttaaataaatgatattattcattca |
17875103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 463
Target Start/End: Original strand, 17873243 - 17873275
Alignment:
| Q |
431 |
gcaacattcatgtcaatagcatatattaacaaa |
463 |
Q |
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| T |
17873243 |
gcaacattcatgtcaatagcatatattaacaaa |
17873275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 534
Target Start/End: Complemental strand, 25962269 - 25962167
Alignment:
| Q |
432 |
caacattcatgtcaatagcatatattaacaaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgt |
531 |
Q |
| |
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|||||||||||| ||||||||| | ||||||||| | |||||||||| ||||||| || || ||| |||||||| |||||| | ||| |||||||| |
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| T |
25962269 |
caacattcatgttaatagcataaaacgacaaagtatctatgcctacaaatatgactatattcaagtttccggaatatccatgtctccggatctacaacgt |
25962170 |
T |
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| Q |
532 |
tga |
534 |
Q |
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||| |
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| T |
25962169 |
tga |
25962167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 481
Target Start/End: Original strand, 12524428 - 12524477
Alignment:
| Q |
432 |
caacattcatgtcaatagcatatattaacaaagtataaaagcctacaaat |
481 |
Q |
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|||||||||||| ||||||||| | | |||||||| |||||||||||||| |
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| T |
12524428 |
caacattcatgttaatagcataaaatgacaaagtacaaaagcctacaaat |
12524477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 537
Target Start/End: Complemental strand, 2350944 - 2350867
Alignment:
| Q |
460 |
caaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgttgatga |
537 |
Q |
| |
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||||||| |||||||||||||| ||||||| || |||| | |||||| ||||| |||| ||| | |||||||||||| |
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| T |
2350944 |
caaagtacaaaagcctacaaatatgactatattaaaatctccggaatagctatgccttcggatctgcaacgttgatga |
2350867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 495
Target Start/End: Original strand, 47587140 - 47587200
Alignment:
| Q |
435 |
cattcatgtcaatagcatatattaacaaagtataaaagcctacaaatttgactatctttaa |
495 |
Q |
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||||||||| ||||||||| | ||| ||||||||||||||||||| ||||||| ||||| |
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| T |
47587140 |
cattcatgttaatagcataaaacgacagagtataaaagcctacaaatatgactatttttaa |
47587200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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