View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_11 (Length: 542)
Name: NF21284_low_11
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 21 - 526
Target Start/End: Complemental strand, 16565271 - 16564753
Alignment:
| Q |
21 |
gtactttattaaacaattaaagtcgatattaaaggcttaaagcaacccatgcatgcccaccaatgcaactgcaatgatggcactcagagtggaaatggag |
120 |
Q |
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| T |
16565271 |
gtactttattaaacaattaaagtcgatattaaaggcttaaagcaacccatgcatgcccaccaatgcaactgcaatgatggcactgagagtggaaatggag |
16565172 |
T |
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| Q |
121 |
tcttttaagggtaaaaagcttataaaaacaattatgacaacgaatttgatcttagtttgtcatattggtgcatgatatat---------tgcacagaact |
211 |
Q |
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| T |
16565171 |
tcttttaagggtaaaaagcttataaaaacaattatgacaacgaatttgatcttagtttgtcatattggtgcatgatatatgatatatattgcacaaaact |
16565072 |
T |
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| Q |
212 |
gtagttaaatatgacttatattattgcaatgacataatttatttatgtacannnnnnnaagtatttttgtggtattcttcttaaaatattcataattaac |
311 |
Q |
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| T |
16565071 |
gtagttaaatatgacttatattattgcaatgacataatttttttatgtacatttttttaactatttttgtggtattcttcttaaaatattcataattaac |
16564972 |
T |
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| Q |
312 |
tatactataatttctctattaaatcaatcattttctcaaaatgcacaaaaaa-cagatcgaaagacatctaaattttgtctttgttgcaattgcagttgt |
410 |
Q |
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| T |
16564971 |
tatactataatttttctattaaatcaatcattttctcaaaatgcacaaaaaaacagatcgaaagacatctaaattttgtctttgttgcaattgcagttgt |
16564872 |
T |
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| Q |
411 |
aaatatggttctaaatttgaggtttagtcacacttgcaattaaactctagggtacggaagatgtcaccatcattaaaatttccttgcaaatgtgaag--- |
507 |
Q |
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| T |
16564871 |
aaatatggttctaaatttgaggtttagtcacacttgcaattaaactctagggtacggaagatgtcaccatcattaaaatttccttgcaaatgtgaagggt |
16564772 |
T |
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| Q |
508 |
agtggataggatgatatat |
526 |
Q |
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| T |
16564771 |
ggtggataggatgatatat |
16564753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 52822524 - 52822457
Alignment:
| Q |
59 |
aaagcaacccatgcatgcccaccaatgcaactgcaatgatggcactcagagtggaaatggagtctttt |
126 |
Q |
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| T |
52822524 |
aaagcaacctatgcatccccaccaactcagctgcaataatgacactaagagtggaagtggagtctttt |
52822457 |
T |
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