View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_13 (Length: 537)
Name: NF21284_low_13
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 21 - 523
Target Start/End: Original strand, 44047599 - 44048101
Alignment:
| Q |
21 |
agtccatcgcttgtaacgcgagcatgatccggaagtagttctgcaagtgctatgaattttgatggcaacaagtttgagtctagtgctacttcagcgagaa |
120 |
Q |
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| T |
44047599 |
agtccatcgcttgtaacgcgggcatgatccggaagtagttctgcaagtgctatgaattttgatggcaacaagtttgagtctagtgctacttcagcgagaa |
44047698 |
T |
|
| Q |
121 |
aattgtcaagtaatttggataccttaagaattgagctttgttttggagatccaggactgtcaaattcatactcgtacatcatttgattttcatctctgaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44047699 |
aattgtcaagtaatttggataccttaagaattgagctttgttttggagatccaggactgtcaaattcatactcgtacatcatttgattttcatctctgaa |
44047798 |
T |
|
| Q |
221 |
gtcactgtcttcatcatccacctcgtccaaattcagaaaagtagaaaagatcctcaaaattgaatctatatcatacattgtgttgtgagcactcgaaggt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44047799 |
gtcactgtcttcatcatccacctcgtccaaattcagaaaagtagaaaagatcctcaaaattgaatctatatcatacattgtgttgtgagcactcgaaggt |
44047898 |
T |
|
| Q |
321 |
gaattcgttggaataagtatgtcttcaagaattgcctgatcgagttgtaaaccaattcgcctctccaaatcacttctacaagaagttgatactaatgttg |
420 |
Q |
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| T |
44047899 |
gaattcgttggaataagtatgtcttcaagaattgcctgatcgagttgtaaaccaattcgcctctccaaatcacttctacaagaagttgatactaatgttg |
44047998 |
T |
|
| Q |
421 |
ctattgcagttttcaataaacatgaaagaaatgctattggaactgagcttttcctagattgagttggtagtaagcgaacaatagtttcaacaatgaccct |
520 |
Q |
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| T |
44047999 |
ctattgcagttttcaataaacatgaaagaaatgctattggaactgagcttttcctagattgagttggtagtaagcgaacaatagtttcaacaatgaccct |
44048098 |
T |
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| Q |
521 |
ttg |
523 |
Q |
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| T |
44048099 |
ttg |
44048101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 327 - 523
Target Start/End: Complemental strand, 39824103 - 39823907
Alignment:
| Q |
327 |
gttggaataagtatgtcttcaagaattgcctgatcgagttgtaaaccaattcgcctctccaaatcacttctacaagaagttgatactaatgttgctattg |
426 |
Q |
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|||||||| || || |||||||||||||| || || ||||| | |||||| | |||||||||||| |||||||||||| |||||| ||| |||||||| |
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| T |
39824103 |
gttggaatcagaatatcttcaagaattgcttggtcaagttgcagaccaatccttctctccaaatcagatctacaagaagtagatactgatgatgctattg |
39824004 |
T |
|
| Q |
427 |
cagttttcaataaacatgaaagaaatgctattggaa-ctgagcttttcctagattgagttggtagtaagcgaacaatagtttcaacaatgaccctttg |
523 |
Q |
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||| |||||| |||| ||| ||||| |||||||||| |||| |||||||| ||||||||||||||||| | | || |||||||||| ||||||||| |
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| T |
39824003 |
cagatttcaacaaacttgagagaaaagctattggaatctga-cttttccttgattgagttggtagtaaactagttattgtttcaacaaggaccctttg |
39823907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 39824409 - 39824240
Alignment:
| Q |
21 |
agtccatcgcttgtaacgcgagcatgatccggaagtagttctgcaagtgctatgaattttgatggcaacaagtttgagtctagtgctacttcagcgagaa |
120 |
Q |
| |
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|||||||||||| || || |||||||| ||||||| || ||||||| ||||| |||||||| | |||||||| ||||| ||||||||||| ||| |
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| T |
39824409 |
agtccatcgcttacaattcgcgcatgatcaggaagtaactcagcaagtgaaatgaactttgatggaagcaagtttgggtctaaagctacttcagcaagat |
39824310 |
T |
|
| Q |
121 |
aattgtcaagtaatttggataccttaagaattgagctttgttttggagatccaggactgtcaaattcata |
190 |
Q |
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| || || || ||||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||| |
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| T |
39824309 |
agttatccagcaatttggataccttaagaattgagctttgttttggcgatcctgggctatcaaaatcata |
39824240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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