View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_15 (Length: 523)
Name: NF21284_low_15
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 36505065 - 36504574
Alignment:
| Q |
16 |
atcgctcataatttagcaagggaaactcagagtcgttctctaataaagttcatttgaatacatatgttaaacaaccgttacttcaatattgacc---gga |
112 |
Q |
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| T |
36505065 |
atcgctcataatttagcaagggaaactcagtgtcgttctcgaataaagttcatttgaatacatatgttaaacaaccgttacttcaatactgaccagagga |
36504966 |
T |
|
| Q |
113 |
ggtcttcctcaaattttcaagctatgggagaatgaatgtttcttttagctcacaaccagctggctcaattcgccttacatatc-atgtgttgta-tgtca |
210 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||| |
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| T |
36504965 |
ggtcttcctcgaattttcaagctatgggagaatgaatgtttcttttagctcacaaccag---gctcaattcgccttgcatatccatgtgttgtaatgtca |
36504869 |
T |
|
| Q |
211 |
ctactatacaagtgatttatagattttaccttgtgcttgcatggacacaaaatcactagatattagattgcttaaaaccgttgttaatagtattttctta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36504868 |
ctactatacaagtgatttatagattttaccttgtgcttgcatggacacaaaatcactagatattagattgattaaaaccgttgttaatagtattttctta |
36504769 |
T |
|
| Q |
311 |
tgcaaactgcaattttttaagtcttatatttcccat---------nnnnnnnnnnnngtctaacatatgaaagctgcaacaatattgctcggattaggaa |
401 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36504768 |
tgcaaactgcaattttttaagtcttatatttcccataaaaaaaaaataaaaaaaaaagtctaacatatgaaagctgcaacaatattgctcggattaggaa |
36504669 |
T |
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| Q |
402 |
aa-attttatgggagagatgaattgagatactctccgtcactataactttatgtatat-aagacacataaatatttagtgttagtcatgtgttct |
494 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36504668 |
aattttttatgggagagatgaattgagatactctccgtcactataactttatgtatataaagacacataaatatttagtgttagtcatgtgttct |
36504574 |
T |
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