View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_16 (Length: 482)
Name: NF21284_low_16
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 38302352 - 38301927
Alignment:
| Q |
12 |
aaccaaaaccattatggaccaaaaagaaagtgattaatattagaaaaacgannnnnnnnn----------acgtgtgatgtcaaatacaatgtcattctc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
38302352 |
aaccaaaaccattatggaccaaaaagaaagtgattaatattagaaaaacgattttttttttttacatcaaaagtgtgatgtcaaatacaatgtcattctc |
38302253 |
T |
|
| Q |
102 |
tctcnnnnnnntaaatataagatataggtaaacaaatacggagtcgcannnnnnnnggacaagaaatactgagtcacaagaagtatatgtattttgacat |
201 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38302252 |
tctcaaaaaaataaatataagatataggtaaacaaatacggagtcgcattttttttggacaagaaatactgagtcacaagaagtgtatgtattttgacat |
38302153 |
T |
|
| Q |
202 |
ttaaataacaaactttcaatattatacacaatcaaagctcaaagttctatggcctctcacttatgtccctctcatgaccactccctcccttacccatctc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38302152 |
ttaaataacaaactttcaatattatacacaatcaaagctcaaagttctatggcctctcacttatgtccctctcatgaccactccctcccttacccatctc |
38302053 |
T |
|
| Q |
302 |
tccaattccctcttggaacatataaaggctatcaaaaggagttaagtcatcatcaaccacccttttccatggaagggttcaacgttggtcctaacatgcc |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
38302052 |
tccaattccctcttggaacatataaaggctatcaaaaggagttaagtcatcatcaaccacccttttccatgtaagggttcaacgttggtcctaaaatgcc |
38301953 |
T |
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| Q |
402 |
ctcaagggttaacaagtatcaacaac |
427 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
38301952 |
ctcaagggttaataagtatcaacaac |
38301927 |
T |
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