View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21284_low_2 (Length: 845)

Name: NF21284_low_2
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21284_low_2
NF21284_low_2
[»] chr2 (19 HSPs)
chr2 (19-831)||(41086598-41087414)
chr2 (43-626)||(37770473-37771065)
chr2 (121-626)||(1269141-1269659)
chr2 (282-626)||(17105072-17105416)
chr2 (15-226)||(10173384-10173589)
chr2 (425-626)||(7695729-7695928)
chr2 (19-223)||(34230274-34230475)
chr2 (251-448)||(14106569-14106768)
chr2 (251-412)||(7874165-7874327)
chr2 (82-225)||(7696034-7696175)
chr2 (155-225)||(13337345-13337415)
chr2 (29-226)||(16952202-16952394)
chr2 (29-226)||(17022867-17023059)
chr2 (29-226)||(17060173-17060365)
chr2 (454-615)||(39339115-39339275)
chr2 (330-473)||(10173705-10173849)
chr2 (284-382)||(13337177-13337277)
chr2 (562-626)||(7873959-7874023)
chr2 (558-611)||(16959709-16959762)
[»] chr6 (7 HSPs)
chr6 (19-629)||(20701609-20702228)
chr6 (24-532)||(3880409-3880912)
chr6 (450-626)||(16510539-16510713)
chr6 (318-470)||(15132636-15132788)
chr6 (171-224)||(15120553-15120606)
chr6 (358-432)||(13423447-13423520)
chr6 (156-226)||(13423536-13423606)
[»] chr7 (21 HSPs)
chr7 (24-615)||(8744824-8745422)
chr7 (281-629)||(16954311-16954659)
chr7 (19-615)||(42533067-42533663)
chr7 (19-625)||(1320455-1321067)
chr7 (19-575)||(6716545-6717103)
chr7 (55-226)||(24324640-24324808)
chr7 (281-579)||(16829011-16829291)
chr7 (482-616)||(33434778-33434913)
chr7 (251-626)||(3478013-3478388)
chr7 (251-418)||(44755494-44755662)
chr7 (450-626)||(47326131-47326306)
chr7 (24-99)||(33719160-33719233)
chr7 (511-626)||(6584722-6584834)
chr7 (140-223)||(44755662-44755745)
chr7 (540-626)||(25160477-25160562)
chr7 (299-412)||(33434982-33435096)
chr7 (497-617)||(3419950-3420068)
chr7 (251-412)||(38306133-38306297)
chr7 (136-191)||(23983312-23983367)
chr7 (540-626)||(10243848-10243933)
chr7 (243-363)||(24324835-24324957)
[»] chr8 (11 HSPs)
chr8 (299-626)||(10248647-10248972)
chr8 (84-626)||(17656872-17657426)
chr8 (540-629)||(36630495-36630583)
chr8 (540-626)||(34389313-34389398)
chr8 (134-226)||(12197987-12198080)
chr8 (134-226)||(12442415-12442508)
chr8 (251-412)||(32066340-32066504)
chr8 (540-626)||(32066630-32066715)
chr8 (251-412)||(34389050-34389214)
chr8 (251-412)||(37986903-37987067)
chr8 (577-626)||(15821751-15821800)
[»] chr5 (15 HSPs)
chr5 (25-613)||(8297148-8297738)
chr5 (15-626)||(26045768-26046385)
chr5 (251-626)||(13954279-13954653)
chr5 (82-626)||(7195109-7195662)
chr5 (154-534)||(14302369-14302760)
chr5 (19-226)||(25992077-25992283)
chr5 (19-222)||(33258688-33258889)
chr5 (123-386)||(7391944-7392213)
chr5 (156-226)||(21402778-21402848)
chr5 (483-624)||(29087211-29087350)
chr5 (505-615)||(24072564-24072671)
chr5 (19-132)||(14302252-14302362)
chr5 (19-63)||(33110006-33110050)
chr5 (171-226)||(13954190-13954245)
chr5 (282-412)||(18593115-18593248)
[»] scaffold0119 (1 HSPs)
scaffold0119 (121-626)||(42043-42561)
[»] chr3 (17 HSPs)
chr3 (141-626)||(25647341-25647841)
chr3 (19-626)||(37123050-37123654)
chr3 (283-626)||(4464013-4464358)
chr3 (281-626)||(14193596-14193946)
chr3 (19-629)||(14755070-14755688)
chr3 (24-226)||(14879506-14879705)
chr3 (19-222)||(28937521-28937721)
chr3 (40-125)||(41039332-41039417)
chr3 (450-626)||(47235376-47235551)
chr3 (454-603)||(20611466-20611614)
chr3 (282-381)||(23328426-23328526)
chr3 (158-223)||(33143891-33143956)
chr3 (540-622)||(19176168-19176249)
chr3 (342-432)||(34475893-34475983)
chr3 (251-418)||(19176369-19176538)
chr3 (497-626)||(34476046-34476173)
chr3 (553-626)||(45163509-45163581)
[»] scaffold0050 (2 HSPs)
scaffold0050 (281-626)||(36362-36713)
scaffold0050 (141-226)||(36779-36864)
[»] chr4 (17 HSPs)
chr4 (164-534)||(22811109-22811490)
chr4 (56-514)||(25752942-25753409)
chr4 (24-222)||(16832833-16833028)
chr4 (24-226)||(48098403-48098603)
chr4 (121-402)||(53823326-53823619)
chr4 (82-225)||(41117835-41117977)
chr4 (82-225)||(49528143-49528285)
chr4 (251-621)||(31050707-31051076)
chr4 (322-626)||(38639526-38639831)
chr4 (330-626)||(19672763-19673056)
chr4 (142-225)||(38637160-38637243)
chr4 (251-382)||(39421058-39421191)
chr4 (155-223)||(2061678-2061746)
chr4 (450-624)||(30964104-30964276)
chr4 (171-226)||(39420969-39421024)
chr4 (540-626)||(8254688-8254773)
chr4 (540-626)||(8268106-8268191)
[»] chr1 (26 HSPs)
chr1 (361-625)||(10785489-10785748)
chr1 (355-626)||(52278166-52278428)
chr1 (466-630)||(9313487-9313653)
chr1 (20-381)||(9313115-9313466)
chr1 (27-226)||(27102261-27102457)
chr1 (121-226)||(31290925-31291030)
chr1 (346-525)||(6583333-6583511)
chr1 (251-593)||(7857344-7857689)
chr1 (121-626)||(16147229-16147733)
chr1 (489-626)||(27101970-27102096)
chr1 (251-626)||(46692864-46693239)
chr1 (121-226)||(6583122-6583227)
chr1 (335-448)||(17033423-17033536)
chr1 (540-629)||(24684811-24684899)
chr1 (19-106)||(11439827-11439913)
chr1 (129-190)||(16577367-16577428)
chr1 (281-386)||(34774771-34774877)
chr1 (345-448)||(38544878-38544981)
chr1 (251-412)||(24658803-24658965)
chr1 (540-626)||(31586096-31586181)
chr1 (156-226)||(32864502-32864572)
chr1 (355-460)||(32864713-32864819)
chr1 (19-224)||(34774943-34775144)
chr1 (558-612)||(50589554-50589608)
chr1 (252-301)||(17033572-17033621)
chr1 (40-117)||(46768360-46768435)
[»] scaffold0063 (2 HSPs)
scaffold0063 (19-423)||(57989-58401)
scaffold0063 (493-626)||(57852-57985)
[»] scaffold0200 (1 HSPs)
scaffold0200 (121-500)||(19167-19559)
[»] scaffold1613 (1 HSPs)
scaffold1613 (345-448)||(1157-1260)


Alignment Details
Target: chr2 (Bit Score: 603; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 19 - 831
Target Start/End: Original strand, 41086598 - 41087414
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactc---aagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctg 115  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||||||||   |  |||||||||||||||||||||||||||||||||| ||||||||    
T  41086598 gaaagcgaccactctaaaaacgatatccaataccacccatcgtcactactcctcaccccccaaagaaaaaacacccctcaaaatcaaactcgcaatcctg 41086697  T
Q  116 aaactccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaa 215  Q
    ||||||||||| ||||  ||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| |||| |||| | |||||||||||    
T  41086698 aaactccaaagtagagtcacatccaaaaagctcttatccgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaaggaaccataaaaa 41086797  T
Q  216 gcccaaaaccacactatccaaagagcggatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccctcacccctggtgca 315  Q
    ||||||||||| |||||||||||||| ||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  41086798 gcccaaaaccaaactatccaaagagctgatctcgaatcaaaagtgattgacccaccagactatatgaccaaatcagaagggcaccctcacccctggtaca 41086897  T
Q  316 ctagagaacaccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaa 415  Q
    | ||||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||| ||||||| |||||||  |||||| ||||| |||||||||||    
T  41086898 ccagagaacaccaaatcacgccaaacaaaattgtagctggacaccgattcccgatctcaaagcaaaagtaatcggtccaccggaaacctgcacacaacaa 41086997  T
Q  416 gtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaaca 515  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  41086998 gtaggacaaacgacaagataagcggtagtgcaagcaacaaacagatcaataggaaaaggcttagctcaacgggacccgctacctccaaacaccctagaca 41087097  T
Q  516 ccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacc 615  Q
    |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  41087098 ccttaacaaccccaaaaaacgcatacaagagctagtaacgacgaataaggacccgagtaacagaggctgactccaaaagaaatcacccccaacaaacacc 41087197  T
Q  616 cgcctcctcacatattatatctaaaataaaatgtttttcaaacatccaagcatgatatcaaacaccatagaatatacgatttccattattctaaatgctc 715  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41087198 cgcctcctcacatattatatctaaaataaaatgtttttcaaatatccaagcatgatatcaaacaccatagaatatacgacttccattattctaaatgctc 41087297  T
Q  716 tctctatcatcatagagagaaactt-aattataatctccttcgaccatactacaatatatcatgtaaagcaatctcgacgaacaagcgttttggatttaa 814  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41087298 tctctatcatcatagagagaaacttaaattataatctccttcgaccatactacaatatatcatgtaaagcaatctccacgaacaagcgttttggatttaa 41087397  T
Q  815 catatgtatgtgtatat 831  Q
    |||||||||||||||||    
T  41087398 catatgtatgtgtatat 41087414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 43 - 626
Target Start/End: Original strand, 37770473 - 37771065
Alignment:
Q  43 atccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagcagagcaacatccaaa 142  Q
    |||||| || |||| ||||||||||||   ||||||||||||||| ||||||||||| |||||||||  |||||| | ||||||| |||| || ||  ||    
T  37770473 atccaacaccacccgtcgtcactactcgc-ccccaaagaaaaaac-cccctcaaaattaaactcacagacctgaa-caccaaagccgagccacctcagaa 37770569  T
Q  143 aagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaaccacact--atccaaagag 240  Q
    |||||| |||  ||||||||||||| | |||| |||||||||||||||| | || |||| |||||||||||| ||||||||||| | |  ||| |||||     
T  37770570 aagctcatatctgaaagatcattcagcttccaacacctctcgacctccgattcaccgaaagaaaccataaaa-gcccaaaaccaaaattgatctaaagaa 37770668  T
Q  241 -------cggatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaat 331  Q
           | |||   | |||||||||||| | || |||| ||  || |||||||||||| |||||||| ||||||  ||| ||| |||||| ||| ||||    
T  37770669 ttgactcctgatccagaatcaaaagtgatcggcccaccaaaccttaggaccaaatcagatgggcacccctcaccctcggtacaccagagaaacactaaat 37770768  T
Q  332 cacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaa 431  Q
    | |||||||   ||||||  || |||||| ||||||| |||||||||||| |||| || |||||||| |||||||| |||| ||| | ||||||||||||    
T  37770769 cgcgccaaatcgaattgctgctagacaccaactcccgatctcgaagcaaaagtaaccggcccaccgataaccagcaaacaaaaagcatgacaaacgacaa 37770868  T
Q  432 gataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaa-caccttaacaactccaa 530  Q
    ||||   |||||||||| |||| || ||||||| ||||| | | | | | ||||  |||||  | ||||||||||||||||| |||||||||||| ||||    
T  37770869 gatatacggtggtgcaaacaacgaataaatcaaaaggaagaagctcaacacaacatgacccatttcctccaaacaccctaaaacaccttaacaaccccaa 37770968  T
Q  531 aaaat-gcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    ||||  ||| |||||||||||| |||||||| |||||||||||| | |||||  |||||||| ||||||||||| ||||||||||||||||||||||    
T  37770969 aaaaacgcaaacaaaagctagtgacgacgaacaaggacccgagttatagaggcagcctccaacagaaatcaccctcaacaaacacccgcctcctcac 37771065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 121 - 626
Target Start/End: Complemental strand, 1269659 - 1269141
Alignment:
Q  121 ccaaagcagagcaacatccaaaaagctcttattcgaaa-gatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagccc 219  Q
    |||||||||||| |||| | |||||||| ||| ||||| ||| ||||| | ||||||| ||||||||||||| ||||  ||| ||||||||||||| |||    
T  1269659 ccaaagcagagccacattcgaaaagctcctatccgaaaagattattcagcttccaccaactctcgacctccgatccactgaaagaaaccataaaaatccc 1269560  T
Q  220 aaaaccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccct 309  Q
    ||||||| |||  | ||||||| | ||       | ||| |||||||||||| | || |||| ||| || ||| ||||||||||||||||| |||||  |    
T  1269559 aaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggactaaatcagaagggcacccctcaccttt 1269460  T
Q  310 ggtgcactagagaa-caccaaatcacgccaaagaaa-attgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagca 407  Q
    |||  || |||||| || ||||| | ||||||  || | |||| || |||| ||||||||| ||||||||||||  ||| || |||| ||  ||||||||    
T  1269459 ggtataccagagaaacatcaaattaagccaaaacaagaatgcagctagacatcgactcccgatctcgaagcaaaattaaccgacccatcgggaaccagca 1269360  T
Q  408 cacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacac 507  Q
     ||||  |||| ||||||||||| ||||  ||||||||||| ||||||||| ||| | ||||||||| ||||||||| | || | ||| |||||||||||    
T  1269359 tacaaacagtaagacaaacgacatgatagatggtggtgcaaacaacaaacatatccaaaggaaaaggcttagctcaatgagatcggctccctccaaacac 1269260  T
Q  508 cctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacg-aataaggacccgagtaacagaggttgcctccaaaagaaatcaccccca 606  Q
    | ||||||| |||||||| || ||||| ||| |||| ||||||| |||||| || |||||||||||||| |||||   |||||| |||||||||||||||    
T  1269259 cataaacactttaacaac-cccaaaaacgcaaacaagagctagtgacgacgaaacaaggacccgagtaatagaggcaacctccagaagaaatcaccccca 1269161  T
Q  607 acaaacacccgcctcctcac 626  Q
    ||||||||||||||||||||    
T  1269160 acaaacacccgcctcctcac 1269141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 282 - 626
Target Start/End: Complemental strand, 17105416 - 17105072
Alignment:
Q  282 accaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagca 379  Q
    |||||||||| ||||||||| ||||||||||| ||| | |||| |||| ||| | | |||| ||  ||||| || ||| ||||||||   |||| |||||    
T  17105416 accaaatcagtagggcacccctcacccctggtacaccaaagaaacacctaattaagtcaaacaaggttgcagctagacgccgactccttatctccaagca 17105317  T
Q  380 aacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttag 479  Q
    || |||| || ||||||| |||||||||||||| | ||| ||  || |||| |||| | | |||||||| || |||||||||||| ||||||||| | |     
T  17105316 aaagtaaccgacccaccggaaaccagcacacaatatgtaagatgaaagacatgatatgagatggtgcaaacaccaaacaaatcaaaaggaaaaggctcat 17105217  T
Q  480 ctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacaga 579  Q
    | |||||||||  ||  |||| |||||||||||||||||||||| | | ||||| |||| | || ||||||| |||||||| | ||||| | ||| ||||    
T  17105216 cacaacgggacaagcaccctctaaacaccctaaacaccttaacagc-caaaaaagtgcaaataagagctagtgacgacgaacatggacctgtgtagcaga 17105118  T
Q  580 ggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    || |||||||||| ||||||| ||||||||||||| |||||||||||    
T  17105117 ggctgcctccaaaggaaatca-ccccaacaaacacacgcctcctcac 17105072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 10173384 - 10173589
Alignment:
Q  15 tcatgaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcct 114  Q
    |||||||| |||| |||||||||| ||||| ||| || || |||||||||||||||  |||||||||| |    | ||||||||| |||||| || ||||    
T  10173384 tcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactca--ccccaaagaata----ctcctcaaaattaaactctcagtcct 10173477  T
Q  115 gaaactccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaa-accataaa 213  Q
     || | ||||||| |||| |||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||| | || |||| ||| ||||  ||    
T  10173478 caa-caccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaagaacaccaacaa 10173576  T
Q  214 aagcccaaaacca 226  Q
    |||||||||||||    
T  10173577 aagcccaaaacca 10173589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 425 - 626
Target Start/End: Complemental strand, 7695928 - 7695729
Alignment:
Q  425 acgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaa 524  Q
    |||||| |||||| |||||||||| ||||||||| ||||| ||||||||| | | | ||| || |  |||| | || ||||| |||||||||||||||||    
T  7695928 acgacatgataagcggtggtgcaaacaacaaacatatcaaaaggaaaaggctcaacacaaaggaattcgcttcttctaaacagcctaaacaccttaacaa 7695829  T
Q  525 ctccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctc 624  Q
    | |||||||| ||| | || ||||||  ||  |||| ||||||||||||||||||||  ||||| |||| |||||| | ||||||||||| |||||| ||    
T  7695828 c-ccaaaaaacgcaaa-aagagctagggacagcgaacaaggacccgagtaacagaggcagcctctaaaataaatcaactccaacaaacactcgcctcttc 7695731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 34230475 - 34230274
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||| |||||||| |||||| ||||||||| |  |||| |||  ||||||||  | ||||||||||||||||| | ||||  ||| |  || |||| |||    
T  34230475 gaaaacgaccactataaaaacgatatccaacaacacccgtcgcaactactcac-ctccaaagaaaaaacacccataaaaaaaaaaatt-cagtcct-aaa 34230379  T
Q  119 ctccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcc 218  Q
    | ||||||  |||| |||||  ||||||||||||| ||||||||||||| | ||||||||||||| ||||||| |||| |||| ||||||| ||||||||    
T  34230378 caccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaaaccacaaaaagcc 34230279  T
Q  219 caaaa 223  Q
    |||||    
T  34230278 caaaa 34230274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 251 - 448
Target Start/End: Original strand, 14106569 - 14106768
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagag-aacaccaaatcacgccaaagaaaattg 348  Q
    |||||||||||| | || |||| ||| || ||||||||||| ||||||||| || |||  ||| ||  |||| |||||||||||| | |||| |  ||||    
T  14106569 atcaaaagtgatcggcccaccagactttaggaccaaatcagcagggcacccctcgccctgggtacatgagaggaacaccaaatcaagtcaaacaggattg 14106668  T
Q  349 caactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaa 448  Q
    || || | ||||||||||| ||||||||||||| |||| || ||||||| |||||| ||||||| ||| | |||| |||||| |||||| ||||||||||    
T  14106669 cagctagtcaccgactccctgtctcgaagcaaaagtaaccggcccaccggaaaccaacacacaataagcaagacagacgacatgataagcggtggtgcaa 14106768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 251 - 412
Target Start/End: Complemental strand, 7874327 - 7874165
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaacaccaaatcacgccaaagaaaattgc 349  Q
    |||||||||||| |||| |||| ||| ||  |||||||||| ||||||||| || |||  ||| ||||||||||||||| |||| | |||  |  |||||    
T  7874327 atcaaaagtgatcgacccaccagactttagaaccaaatcagcagggcacccatcgccctcggtacactagagaacaccatatcaagtcaagcaggattgc 7874228  T
Q  350 aactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaa 412  Q
    | || |||||| ||||||| ||||||||||||   || || ||||||| | ||||||||||||    
T  7874227 agctagacaccaactcccgatctcgaagcaaaaaaaaccggcccaccggacaccagcacacaa 7874165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 7696175 - 7696034
Alignment:
Q  82 aaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctc 181  Q
    |||||||||||| ||||| ||||||    ||||||| | ||||||  |||| ||||||  ||| ||| ||| |||||||||||||| | |||||||||||    
T  7696175 aaaaacacccctaaaaataaaactcctggtcctgaa-caccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctc 7696077  T
Q  182 tcgacctccgttccatcgaaggaaaccataaaaagcccaaaacc 225  Q
     |||||| || |||| |||| |||||| | ||||||||||||||    
T  7696076 ccgaccttcgatccaccgaaagaaaccgt-aaaagcccaaaacc 7696034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 13337415 - 13337345
Alignment:
Q  155 gaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacc 225  Q
    |||||||||||||   | ||||||||||||||||||  |||| |||| |||||||||||||| ||||||||    
T  13337415 gaaagatcattcagtgttcaccacctctcgacctcctatccaccgaaagaaaccataaaaagtccaaaacc 13337345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 16952202 - 16952394
Alignment:
Q  29 actgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagca 128  Q
    |||| ||||||||||| ||  || || |||||||||||||||  ||||||||||    |||||||| |||| |||||| || |||| || | ||||||      
T  16952202 actgcaaaaaagatattcatcaccactcatcgtcactactcac-ccccaaagaa----cacccctctaaatgaaactcccagtcctcaa-caccaaagtt 16952295  T
Q  129 gagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaa-accataaaaagcccaaaacca 226  Q
    || | |||||| |||||||| ||| ||||||||| || | | ||||||||||||| ||||||| |||| |||| ||| |||| |||| | |||||||||    
T  16952296 gatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaacca 16952394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 17022867 - 17023059
Alignment:
Q  29 actgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagca 128  Q
    |||| ||||||||||| ||  || || |||||||||||||||  ||||||||||    |||||||| |||| |||||| || |||| || | ||||||      
T  17022867 actgcaaaaaagatattcatcaccactcatcgtcactactcac-ccccaaagaa----cacccctctaaatgaaactcccagtcctcaa-caccaaagtt 17022960  T
Q  129 gagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaa-accataaaaagcccaaaacca 226  Q
    || | |||||| |||||||| ||| ||||||||| || | | ||||||||||||| ||||||| |||| |||| ||| |||| |||| | |||||||||    
T  17022961 gatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaacca 17023059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 17060173 - 17060365
Alignment:
Q  29 actgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagca 128  Q
    |||| ||||||||||| ||  || || |||||||||||||||  ||||||||||    |||||||| |||| |||||| || |||| || | ||||||      
T  17060173 actgcaaaaaagatattcatcaccactcatcgtcactactcac-ccccaaagaa----cacccctctaaatgaaactcccagtcctcaa-caccaaagtt 17060266  T
Q  129 gagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaa-accataaaaagcccaaaacca 226  Q
    || | |||||| |||||||| ||| ||||||||| || | | ||||||||||||| ||||||| |||| |||| ||| |||| |||| | |||||||||    
T  17060267 gatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaacca 17060365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 615
Target Start/End: Original strand, 39339115 - 39339275
Alignment:
Q  454 aaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaa 553  Q
    ||||||||||| ||||||||| | | | ||||| ||| | |  |||||||||  | ||||||||| ||| || |||||||   || |||| |||||||||    
T  39339115 aaacaaatcaaaaggaaaaggctcaacacaacgtgacacacaccctccaaacttcgtaaacacctaaaccac-ccaaaaagcacaaacaagagctagtaa 39339213  T
Q  554 cgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacc 615  Q
    ||||||| | ||||||| ||||||| |||||| || |||  ||||||||| |||||| ||||    
T  39339214 cgacgaacatggacccgtgtaacaggggttgcttctaaagaaaatcacccacaacaaccacc 39339275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 330 - 473
Target Start/End: Original strand, 10173705 - 10173849
Alignment:
Q  330 atcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaa-cga 428  Q
    |||| |||||| || |||||| || |||||||||| ||| || |||| |||| |||| |  | ||||| ||||||  |||||| || || |||||| |||    
T  10173705 atcaagccaaacaagattgcagctagacaccgacttccgatcccgaaacaaaagtaaccagcacaccggaaaccaatacacaataaataagacaaaacga 10173804  T
Q  429 caagataagtggtggtgcaagcaacaaacaaatcaataggaaaag 473  Q
    || |||| | |||||||||| | ||||||||||||| ||||||||    
T  10173805 catgatatgcggtggtgcaaaccacaaacaaatcaaaaggaaaag 10173849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 13337277 - 13337177
Alignment:
Q  284 caaatcagaagggcaccctcac-ccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaa 381  Q
    |||||||||||||||||| | | ||||||| ||| |||||| ||||||||||||||| | || |||||  || ||||||||||| |  ||||||||||||    
T  13337277 caaatcagaagggcaccccctcaccctggtacaccagagaaacaccaaatcacgccagataagattgctgctagacaccgactctcaatctcgaagcaaa 13337178  T
Q  382 c 382  Q
    |    
T  13337177 c 13337177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 626
Target Start/End: Complemental strand, 7874023 - 7873959
Alignment:
Q  562 aaggacccgagtaacagaggttgcctccaaaag-aaatcacccccaacaaacacccgcctcctcac 626  Q
    ||||||||| | |||||| |||||||||||||| || |||||||||||||| |||| |||||||||    
T  7874023 aaggacccgtgaaacagatgttgcctccaaaagtaactcacccccaacaaa-accctcctcctcac 7873959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 611
Target Start/End: Complemental strand, 16959762 - 16959709
Alignment:
Q  558 gaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaa 611  Q
    ||||| |||||||| |||||||||  ||||||||||| |||||||| |||||||    
T  16959762 gaatatggacccgaataacagaggcggcctccaaaaggaatcacccacaacaaa 16959709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 629
Target Start/End: Original strand, 20701609 - 20702228
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||  ||||||| ||||||||||| | |||| |||||||  | || ||||     
T  20701609 gaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcac-ccccaaaaaaaaaacaccctttaaaaacaaactcctagtcttgaa- 20701706  T
Q  119 ctccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcc 218  Q
    |  |||||  |||| |||| | |||||||| ||| |||||||||||||| | ||||| ||||||||||||||| |||| |||| ||||||||||||||||    
T  20701707 caacaaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaaaccataaaaagcc 20701806  T
Q  219 caaaaccacact--atccaaagagcg-------gatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccc 308  Q
    |||||||| |||  | ||||||| |        ||| ||| |||||||||||| | |  ||||  ||| ||||||||||||||||||||||| |||||||    
T  20701807 caaaaccaaacttaagccaaagaactaactcccgatctcgaatcaaaagtgatcggcacaccagtctaaatgaccaaatcagaagggcacccctcacccc 20701906  T
Q  309 tggtgcactagagaaca-ccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagca 407  Q
     ||| ||| |||||| | ||||||||||||||| ||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||| || |||||| ||    
T  20701907 cggtacaccagagaaaaaccaaatcacgccaaacaaatttgcagctagacaccgaatcccgatctcaaagcaaaagtaaccggcccatcggaaaccatca 20702006  T
Q  408 cacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacac 507  Q
    ||||| ||||||||||||| |||||||| | ||| |||||| ||||||||| |||||  |||||| ||   ||||||||||||||||| |||||||||||    
T  20702007 cacaaaaagtaggacaaacaacaagatacgcggtagtgcaaacaacaaacagatcaaacggaaaaagtaccgctcaacgggacccgcttcctccaaacac 20702106  T
Q  508 cctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaa 607  Q
    |||||||||||||||||  ||||||||||||||||| | ||||| |||||||| |||||||||||||||| ||| | |||||||||||||||||||||||    
T  20702107 cctaaacaccttaacaatcccaaaaaatgcatacaagaactagtgacgacgaacaaggacccgagtaacaaaggctacctccaaaagaaatcacccccaa 20702206  T
Q  608 caaacacccgcctcctcacata 629  Q
    ||||||||||||||||||||||    
T  20702207 caaacacccgcctcctcacata 20702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 24 - 532
Target Start/End: Original strand, 3880409 - 3880912
Alignment:
Q  24 cgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactcca 123  Q
    |||||||| |||||| ||||||||| || | |  |||||||||||||  |||| |||||||||||||||||||||| ||||||  | || |||| | |||    
T  3880409 cgaccactataaaaacgatatccaacaccatctgtcgtcactactcac-cccctaagaaaaaacacccctcaaaattaaactccaagtcttgaa-cacca 3880506  T
Q  124 aagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaa 223  Q
    |||| |||| ||||||||||||||| ||| |||||||| ||||||| ||||||||| ||||||||||| ||||  ||| ||||||||||||| | |||||    
T  3880507 aagctgagccacatccaaaaagctcatatccgaaagattattcaacttccaccaccactcgacctccgatccacggaaagaaaccataaaaatctcaaaa 3880606  T
Q  224 ccacact--atccaaagagcggatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcacc-ctcacccctggtgcactaga 320  Q
    ||| |||  |||||||         ||| |||||||||||| | || |||| ||| || |||||||||||||||||||| |||||||  |||  || |||    
T  3880607 ccaaacttgatccaaac--------tcgaatcaaaagtgatcggcccaccaaactttaggaccaaatcagaagggcacctctcaccctcggtaaaccaga 3880698  T
Q  321 gaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtag 419  Q
    ||| |||||||||| |||||| || || ||| || |||||||||||||| |||| ||||||| ||||  | ||||||| ||||||||| |||| ||||      
T  3880699 gaaacaccaaatcatgccaaacaagatagcagctagacaccgactcccgatctcaaagcaaaagtaactggcccaccggaaaccagcaaacaaaaagtct 3880798  T
Q  420 gacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctcc-aaacaccctaaacacct 518  Q
    |||||| |||| |||| |||||||||||| ||||||| | ||||| ||||||| | | | |||||| ||||||||| | ||| |||||||||||||| ||    
T  3880799 gacaaaggacatgatatgtggtggtgcaaacaacaaatatatcaaaaggaaaaagctcaactcaacaggacccgcttcttccaaaacaccctaaacatct 3880898  T
Q  519 taacaactccaaaa 532  Q
    ||||| | ||||||    
T  3880899 taacagccccaaaa 3880912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 450 - 626
Target Start/End: Original strand, 16510539 - 16510713
Alignment:
Q  450 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagcta 549  Q
    ||||||||||||||| ||||||||| | | | |||||| || |||  ||||||||| || ||||||||| ||| || | ||||   | | |||| |||||    
T  16510539 caacaaacaaatcaaaaggaaaaggctcaacacaacggaacacgcaccctccaaactccataaacacctaaaccacccgaaaagcagaa-acaagagcta 16510637  T
Q  550 gtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    || |||||||| | ||||||| |||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  16510638 gtgacgacgaacatggacccgtgtaagagaggtttcctccaaaggaaatca-ccccaacaaacacccgcctcctcac 16510713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 318 - 470
Target Start/End: Original strand, 15132636 - 15132788
Alignment:
Q  318 agagaacaccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagt 417  Q
    ||||||||||| |||| | |||| |  |||||| || | |||||||||||| |||||||||||| |||| || |||||||||||||| ||||||| ||      
T  15132636 agagaacaccatatcaagtcaaacaggattgcagctagtcaccgactcccgatctcgaagcaaaagtaaccggcccaccgaaaaccatcacacaataatc 15132735  T
Q  418 aggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaa 470  Q
    | || ||||  || |||||| |||||||||| | ||||||| ||||| |||||    
T  15132736 aagataaactgcatgataagcggtggtgcaaacgacaaacacatcaaaaggaa 15132788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 15120553 - 15120606
Alignment:
Q  171 tccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaac 224  Q
    ||||||||||||||||||||| |||| | || ||||||||||||||||||||||    
T  15120553 tccaccacctctcgacctccgatccaccaaaagaaaccataaaaagcccaaaac 15120606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 13423520 - 13423447
Alignment:
Q  358 accgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaag 432  Q
    |||||||| || ||||||| |||| || ||||  ||||||||||||||||||||| ||||| |||||||||||||    
T  13423520 accgactctcgatctcgaatcaaaagtgatcggtccaccgaaaaccagcacacaa-aagtaagacaaacgacaag 13423447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 13423606 - 13423536
Alignment:
Q  156 aaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacca 226  Q
    |||||||| ||| | ||||||||||| || |||||| ||||||||| ||||||||| |||||||| |||||    
T  13423606 aaagatcaatcagcttccaccacctcgcggcctccggtccatcgaaagaaaccatataaagcccataacca 13423536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 5e-86; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 24 - 615
Target Start/End: Complemental strand, 8745422 - 8744824
Alignment:
Q  24 cgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactcca 123  Q
    |||||| || |||||  |||||||| || | || |||||||||||||  ||||||||||||| ||||||||||||| |||||| || || |||| | |||    
T  8745422 cgaccaatgaaaaaacaatatccaacaccatccttcgtcactactcac-ccccaaagaaaaa-cacccctcaaaattaaactcccagtcttgaa-cacca 8745326  T
Q  124 aagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaa 223  Q
    |||| |||| |||||| |||||||| |||  |||||||||| || | ||||| ||||||||||||||| |||| |||| |||||||||||||||||||||    
T  8745325 aagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaa 8745226  T
Q  224 ccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtg 313  Q
    ||| |||  |||||| || | ||       | ||| |||||||||||| | || |||| | | || ||||||||||||||| ||||| ||||||  ||||    
T  8745225 ccaaacttgatccaacgaactgaatcccgatctcgaatcaaaagtgatcggcccaccagaatttaggaccaaatcagaaggccacccctcaccctcggtg 8745126  T
Q  314 cactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaa 412  Q
    ||| |||||| ||||| ||||| ||||| || |||||| || ||||||| || ||| |||||||||||| |||| || ||||||||||||||||||||||    
T  8745125 caccagagaaacaccagatcacaccaaacaacattgcagctagacaccgccttccgatctcgaagcaaaagtaaccggcccaccgaaaaccagcacacaa 8745026  T
Q  413 caagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaa 512  Q
     ||| | ||||||||||| |||| | |||||||||| ||||||| | ||||| |||| |||| | | ||||||  ||| |||| |||||||||| | |||    
T  8745025 aaagcatgacaaacgacatgatatgcggtggtgcaaacaacaaatagatcaaaaggagaaggctcaactcaacaagactcgcttcctccaaacatcgtaa 8744926  T
Q  513 acaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaac 612  Q
    ||||||||||||| | |||||| ||| ||||  |||||| |||||||| ||||| |||||||||| |||   ||||||||||| ||||||||||||||||    
T  8744925 acaccttaacaac-cgaaaaaacgcaaacaagggctagtgacgacgaacaaggaaccgagtaacaaaggaaacctccaaaagagatcacccccaacaaac 8744827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 281 - 629
Target Start/End: Complemental strand, 16954659 - 16954311
Alignment:
Q  281 gaccaaatcagaagggcaccc-tcacccctggtgcactagagaac-accaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagc 378  Q
    ||||||||||||||||||||| ||||| ||| | ||| ||||||  |||||||| ||||||  || |||||| || |||||| |||| || ||| |||||    
T  16954659 gaccaaatcagaagggcacccctcacctctgatacaccagagaaagaccaaatcgcgccaaccaagattgcagctagacaccaactctcgatctggaagc 16954560  T
Q  379 aaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggttta 478  Q
    ||| ||||||| |||| || |||||||||||||  ||||| |||||||||||||||| |  ||||||||| ||||||||| ||| | ||||||||| | |    
T  16954559 aaaagtaatcggcccatcggaaaccagcacacagtaagtatgacaaacgacaagatatgcagtggtgcaaacaacaaacatatccaaaggaaaaggctca 16954460  T
Q  479 gctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacag 578  Q
     ||||||| ||||||||||||||||| |||||||||||||||||||   | ||||||||| || | || |||| ||||| || ||| ||||||||||||     
T  16954459 actcaacgagacccgctacctccaaaaaccctaaacaccttaacaa--tcgaaaaatgcaaactagagatagtgacgacaaacaagtacccgagtaacaa 16954362  T
Q  579 aggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcacata 629  Q
    ||  |||||||| | ||||||||||||||||||||| | ||||||||||||    
T  16954361 agactgcctccagacgaaatcacccccaacaaacactctcctcctcacata 16954311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 19 - 615
Target Start/End: Original strand, 42533067 - 42533663
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||||| |||| |||||||| || ||||||||| |||||||||||||||||  ||||| ||  ||||||||| || ||||  ||||||      ||||||    
T  42533067 gaaagcaaccattgtaaaaatgaaatccaataccacccatcgtcactactc--gcccccaaagaaaaacacctctaaaaaataaactc------ctgaaa 42533158  T
Q  119 ctccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcc 218  Q
    |  |||||| || | | |||| ||||||||||||  |||||||| ||||    |||||||||| ||||||| | |||| |||| ||||||||||||||||    
T  42533159 c--caaagctgatccatatccgaaaagctcttatctgaaagatcgttcagttgccaccacctcacgacctctgatccaccgaaagaaaccataaaaagcc 42533256  T
Q  219 caaaaccacact--atccaaagag-------cggatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccc 308  Q
    |||| ||| |||  | ||||||         | ||| ||| ||||||||||||   || |||| ||| || ||||||||||| ||||||||| |||||||    
T  42533257 caaa-ccaaacttaagccaaaggattgactcccgatctcgaatcaaaagtgatcagcccaccagactttaggaccaaatcaggagggcacccctcacccc 42533355  T
Q  309 tggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagca 407  Q
     | ||||| |||||| ||||| ||| ||||||| || | |||| |||||||| |||||||| |||||||||||| |||| || |||| || | |||||||    
T  42533356 cgatgcaccagagaaacaccacatcgcgccaaataagaatgcagctggacacagactcccgatctcgaagcaaaagtaaccggcccatcggagaccagca 42533455  T
Q  408 cacaacaagtaggacaaacgacaagataagtggtggtgcaagcaa-caaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaaca 506  Q
    ||||| ||||| |||||||||||||| |   |||||||||| ||| |||||||||||| ||||||||| | ||  ||||||||| |||| ||||||| ||    
T  42533456 cacaaaaagtatgacaaacgacaagagatacggtggtgcaaacaaccaaacaaatcaaaaggaaaaggctcagaacaacgggacacgcttcctccaacca 42533555  T
Q  507 ccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcaccccca 606  Q
    || |||||||||||||||| |||||||   || |||| ||| | | |||||||| | |||||||||||||||| | | |||||||||||||||||| | |    
T  42533556 ccttaaacaccttaacaac-ccaaaaatcacaaacaagagccaatgacgacgaacatggacccgagtaacagatgctacctccaaaagaaatcacctcta 42533654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 19 - 625
Target Start/End: Complemental strand, 1321067 - 1320455
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||||| ||||||||||||| |||||| ||||| || |||||||||||||||  |||||||||||||   ||||||||||  |||||| |  || |||||    
T  1321067 gaaagcaaccactgtaaaaacgatatctaataccactcatcgtcactactcaccccccaaagaaaaa---cccctcaaaactaaactccctgtcatgaaa 1320971  T
Q  119 ctccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcc 218  Q
    |  |||||  |||| |||||  ||||| |||||| |||  |||||| ||    ||||| |||||||||||||| |||| |||| ||||||||||||||||    
T  1320970 c--caaagttgagccacatctgaaaagatcttatccgagggatcatacagttgccaccccctctcgacctccgatccaccgaaagaaaccataaaaagcc 1320873  T
Q  219 caaaaccaca-ct--atccaaagagcggatatc-------gcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcaccc 307  Q
    |||||||| | ||  | ||||||| | ||  ||       | |||||||||||| | || |||| ||| ||||||||||||| |||||||||| ||||||    
T  1320872 caaaaccaaaacttgagccaaagaactgacttccgattttgaatcaaaagtgatcggcccaccagactttatgaccaaatcaaaagggcacccctcaccc 1320773  T
Q  308 ctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagc 406  Q
    | | | ||  |||||| ||||||||  ||||||| |||||| || || |||||| ||||||| ||||||||||||   |||||  |||||| |||||| |    
T  1320772 ccgatacatcagagaaacaccaaattgcgccaaacaaaattacagctagacaccaactcccgatctcgaagcaaaaa-aatcggtccaccggaaaccaac 1320674  T
Q  407 acacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaaca 506  Q
    ||| || ||||| | ||| ||||| |||| | |||||||||| ||||||||| ||  | ||| ||||  | ||||||||||||||| || || |||||||    
T  1320673 acagaaaaagtatggcaaccgacatgatatgcggtggtgcaaacaacaaacagattcaaagggaaagactcagctcaacgggacccacttccaccaaaca 1320574  T
Q  507 ccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaat-aaggacccgagtaacagaggttgcctccaaaagaaatcaccccc 605  Q
    || ||||||||| |||||  | |||||||||| |||| ||||||| ||||||||  ||||||||| |||| | ||| |||||| ||||||||||||||||    
T  1320573 ccataaacacct-aacaatcctaaaaaatgcaaacaagagctagtgacgacgaaacaaggacccgtgtaaaataggctgcctctaaaagaaatcaccccc 1320475  T
Q  606 aacaaacacccgcctcctca 625  Q
    ||||||||||  ||||||||    
T  1320474 aacaaacaccttcctcctca 1320455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 19 - 575
Target Start/End: Original strand, 6716545 - 6717103
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||| ||||||||||||||| | ||||  | || |||||| |||||||||||  |||||| ||||   |||||| |||||| |||||| || |||| ||     
T  6716545 gaaaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcac-ccccaacgaaa---caccccacaaaattaaactcccattcctcaa- 6716639  T
Q  119 ctccaaagcagagcaacatccaaaaagctcttattcgaaa-gatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagc 217  Q
    | ||||||| |||| ||||||  |||  |||||| ||||| ||||| ||| | |||||||||||||||| || | |||| |||| ||||||||||||| |    
T  6716640 caccaaagctgagccacatccggaaaaatcttatccgaaaagatcaatcagcttccaccacctctcgacttc-gatccaccgaaagaaaccataaaaaac 6716738  T
Q  218 ccaaaaccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcaccc 307  Q
    |||| |||| |||  | ||||||| | ||       | ||| |||||||||||| | || |||| ||| |||||  ||||||||||||||||| |||| |    
T  6716739 ccaagaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggccaaccagactttatgattaaatcagaagggcacccctcactc 6716838  T
Q  308 ctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagc 406  Q
      ||| ||| |||||| || ||||||| |||||| || |||||| || |||||||||||||| |||| ||| ||| ||||  | ||||||||||||||||    
T  6716839 tcggtacaccagagaaacatcaaatcaagccaaataagattgcagctagacaccgactcccgatctcaaagtaaaagtaactggcccaccgaaaaccagc 6716938  T
Q  407 acacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaaca 506  Q
    || ||| ||||| |||||| ||||  |||||  |  |||||| ||||||||    ||| |||||||||    |||||||||| ||| || ||||||||||    
T  6716939 acgcaaaaagtaagacaaatgacataataagcagaagtgcaaacaacaaac----caaaaggaaaaggcactgctcaacggg-cccactccctccaaaca 6717033  T
Q  507 ccctaaacaccttaacaactc-caaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaa 575  Q
    ||||||||||||||| ||| |  ||||||   | |||| ||||||| |||||||| || |||||||||||    
T  6717034 ccctaaacaccttaaaaacccaaaaaaaaaaaaaacaagagctagtgacgacgaacaaagacccgagtaa 6717103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 24324640 - 24324808
Alignment:
Q  55 ccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagcagagcaacatccaaaaagctcttattc 154  Q
    ||||||||||||||||  |||| ||  |||||||||||||||||| |||||| |  ||||||| | ||||||| |||| ||| || |||||||| ||  |    
T  24324640 ccatcgtcactactca--cccctaaagaaaaacacccctcaaaataaaactctccgtcctgaa-caccaaagctgagccacagccgaaaagctcctaacc 24324736  T
Q  155 gaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacca 226  Q
    ||||||||||||| | ||||||||| ||||||||||| |||| | || ||||||||||||||||||||||||    
T  24324737 gaaagatcattcagcttccaccacccctcgacctccgatccacctaaagaaaccataaaaagcccaaaacca 24324808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 281 - 579
Target Start/End: Original strand, 16829011 - 16829291
Alignment:
Q  281 gaccaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagc 378  Q
    ||||||||||||||||||||| ||||||||| | |||||||||| ||||||||| ||||||  || ||||||  | |||||| |||| |  ||| |||||    
T  16829011 gaccaaatcagaagggcacccctcacccctgatacactagagaaacaccaaatcgcgccaaccaagattgcaggtagacaccaactctcaatctggaagc 16829110  T
Q  379 aaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggttta 478  Q
    ||| ||||||| |||| || |||||||||||||| ||||  |||||||||||||||| |  ||||||||| |                   ||||| |||    
T  16829111 aaaagtaatcgacccatcggaaaccagcacacaataagtttgacaaacgacaagatatgcagtggtgcaaac-------------------aaaggctta 16829191  T
Q  479 gctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacag 578  Q
     ||||||||||||||||||||||||| ||||||||||||||||| |||  |||||| ||| || ||||||||| ||||| || ||| || ||||||||||    
T  16829192 actcaacgggacccgctacctccaaaaaccctaaacaccttaaccact-gaaaaaacgcaaactaaagctagtgacgacaaacaagtactcgagtaacag 16829290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 482 - 616
Target Start/End: Complemental strand, 33434913 - 33434778
Alignment:
Q  482 caacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcata-caaaagctagtaacgacgaataaggacccgagtaacagag 580  Q
    |||||||||||||| ||||||||||||||||| |||| ||| || | |||||   || | ||  ||||||| |||||||| |  ||||||||||||||||    
T  33434913 caacgggacccgctccctccaaacaccctaaatacctaaaccacccaaaaaagcacaaaacaggagctagtgacgacgaacatagacccgagtaacagag 33434814  T
Q  581 gttgcctccaaaagaaatcacccccaacaaacaccc 616  Q
    ||||||| |||| |||||||||||||||||||||||    
T  33434813 gttgccttcaaaggaaatcacccccaacaaacaccc 33434778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 251 - 626
Target Start/End: Complemental strand, 3478388 - 3478013
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaac-accaaatcacgccaaagaaaattg 348  Q
    |||||||||||| | || |||| ||| || ||||||| ||||||||||||| ||||||| | |  |||||||||  |||  |||| ||||||  ||||||    
T  3478388 atcaaaagtgatcggcccaccaaactttaggaccaaaacagaagggcacccctcacccccgatcaactagagaattaccctatcaagccaaaccaaattg 3478289  T
Q  349 caactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaa 448  Q
    || || | |||||||||||| || ||||||||| ||||||| |||| |  |||  |||||||||| || | ||||||||||| |||| |  |||||||||    
T  3478288 cagctagtcaccgactcccgatcccgaagcaaaagtaatcggcccatcagaaatgagcacacaaccagcaagacaaacgacatgatatgcagtggtgcaa 3478189  T
Q  449 gcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctcc-aaaca-ccctaaacaccttaacaactccaaaaaatgcatacaaaag 546  Q
    || |||||  |||||| ||||||||| | | |||||  |||| |||  ||||| ||||| ||  ||| ||||||||||  || ||||| ||  |||| ||    
T  3478188 gcgacaaa-taatcaaaaggaaaaggctcatctcaaaaggacacgcaccctccaaaacatccaaaaaaaccttaacaa--cccaaaaacgccaacaagag 3478092  T
Q  547 ctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    ||||| |||||||||| | ||||| ||||  |||| ||||||||||  |||||| |||||| |||||||| || ||||||    
T  3478091 ctagtgacgacgaatatgaacccgtgtaattgaggatgcctccaaataaaatca-ccccaaaaaacaccccccacctcac 3478013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 251 - 418
Target Start/End: Complemental strand, 44755662 - 44755494
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattg 348  Q
    |||||||||||| | || |||| ||| || ||||||||||||||||||||| ||||| | ||| ||| |||||| |||||||||||| |||| ||||| |    
T  44755662 atcaaaagtgatcggcccaccagactttaggaccaaatcagaagggcacccctcaccac-ggtacaccagagaaacaccaaatcacgtcaaacaaaatag 44755564  T
Q  349 caactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagta 418  Q
    || || ||||||||||||||  ||| |||||||  |||| | |||||||  ||||||||||||| |||||    
T  44755563 cagctagacaccgactcccgacctcaaagcaaaattaatgggcccaccgctaaccagcacacaaaaagta 44755494  T

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Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 626
Target Start/End: Original strand, 47326131 - 47326306
Alignment:
Q  450 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagcta 549  Q
    ||||||||||||||| ||||||||| | | | ||||| ||| |||  ||||||||| || |||| |||| ||| || |||||||   || |||| |||||    
T  47326131 caacaaacaaatcaaaaggaaaaggctcaacacaacgtgacacgcaccctccaaactccgtaaatacctaaaccac-ccaaaaagcacaaacaagagcta 47326229  T
Q  550 gtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    ||||||||||| | ||||||| |||||| ||||||| || ||| |||||||||| |||||| | ||| |||||||||    
T  47326230 gtaacgacgaacatggacccgtgtaacaaaggttgcttctaaaggaaatcacccacaacaaccgcccacctcctcac 47326306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 33719233 - 33719160
Alignment:
Q  24 cgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaat 99  Q
    ||||| ||||||||| ||||||||| ||||| |||||||||||||||  ||||||||||||||||||||| |||||    
T  33719233 cgacctctgtaaaaatgatatccaacactactcatcgtcactactca--ccccaaagaaaaaacacccctaaaaat 33719160  T

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Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 511 - 626
Target Start/End: Complemental strand, 6584834 - 6584722
Alignment:
Q  511 aaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaa 610  Q
    ||||||||||||||| |  | ||||||| |||| ||||||  |||||||  | ||||||| |||| ||||| |  ||||||||||||||| |||||||||    
T  6584834 aaacaccttaacaaccc--ataaatgcaaacaagagctagcgacgacgatcatggacccgtgtaatagaggctatctccaaaagaaatca-ccccaacaa 6584738  T
Q  611 acacccgcctcctcac 626  Q
    ||||| ||||||||||    
T  6584737 acacctgcctcctcac 6584722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 44755745 - 44755662
Alignment:
Q  140 aaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaa 223  Q
    ||||| ||||||| | |||||||||||| | |||||||||| |||||||| | |  | |||| |||||||||||||||||||||    
T  44755745 aaaaaactcttatccaaaagatcattcagcttccaccacctatcgacctctgatataccgaaagaaaccataaaaagcccaaaa 44755662  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 540 - 626
Target Start/End: Complemental strand, 25160562 - 25160477
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||| ||||||| |||||||| | ||||||| |||||| ||||||| |   || ||||||||||| |||||||||||||||||||||    
T  25160562 acaagagctagtgacgacgaacatggacccgtgtaacataggttgctttttaaggaaatcacccc-aacaaacacccgcctcctcac 25160477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 412
Target Start/End: Complemental strand, 33435096 - 33434982
Alignment:
Q  299 ccctcacccctggtgcactagagaacaccaaatcacgccaaagaaa-attgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccg 397  Q
    ||||| |||| ||| ||| |||||| ||||||||| || ||| ||| ||| ||||| ||| | |||| ||| |||||||||||| ||||||| |||||||    
T  33435096 ccctcgcccccggtacaccagagaaaaccaaatcaagctaaacaaagattacaactagacccggactaccgatctcgaagcaaaagtaatcggcccaccg 33434997  T
Q  398 aaaaccagcacacaa 412  Q
     |||||| |||||||    
T  33434996 gaaaccaacacacaa 33434982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 617
Target Start/End: Original strand, 3419950 - 3420068
Alignment:
Q  497 cctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaa 596  Q
    ||||||||| || ||||||||| ||| || |||||||   || |||| ||||||| || ||||| | ||||||| |||||||||||||| ||||||  ||    
T  3419950 cctccaaactccgtaaacacctaaaccac-ccaaaaagcacaaacaagagctagtgacaacgaacatggacccgtgtaacagaggttgcttccaaagaaa 3420048  T
Q  597 atcacccccaacaaacacccg 617  Q
    |||| ||||||||| ||||||    
T  3420049 atca-ccccaacaagcacccg 3420068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 251 - 412
Target Start/End: Complemental strand, 38306297 - 38306133
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaaca-ccaaatcacgccaaagaaa-att 347  Q
    |||||||||||| | || |||| ||||||  ||||||| || ||||||||| || ||||  || ||| |||||| | |||||||| | |||| ||| |||    
T  38306297 atcaaaagtgatcggcccaccagactatagtaccaaattagcagggcacccctcgccccctgtacaccagagaaaaaccaaatcaagtcaaacaaagatt 38306198  T
Q  348 gcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaa 412  Q
    ||| || ||| |||||||||| ||||||||| ||   || || ||||||||||||||||||||||    
T  38306197 gcagctagaccccgactcccgttctcgaagccaaatgaaccggcccaccgaaaaccagcacacaa 38306133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 23983367 - 23983312
Alignment:
Q  136 atccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccg 191  Q
    |||| |||||||| ||||||||||||||||||||   ||||||||||| |||||||    
T  23983367 atccgaaaagctcatattcgaaagatcattcaactgtcaccacctctcaacctccg 23983312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 626
Target Start/End: Complemental strand, 10243933 - 10243848
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||| ||||||| |||||||| | | ||||| |||||||||||||| || ||| ||||||| |||||||||||| | |||| |||||    
T  10243933 acaagagctagtgacgacgaacatgtacccgtgtaacagaggttgcttctaaaggaaatca-ccccaacaaacatcggccttctcac 10243848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 243 - 363
Target Start/End: Original strand, 24324835 - 24324957
Alignment:
Q  243 gatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaatcacgccaaa 340  Q
    ||| ||| ||||||| |||| | || |||| ||| || ||||||||||||||||||||| | | ||| ||| ||| | |||| ||||||||||| |||||    
T  24324835 gatctcgaatcaaaattgatcggcccaccaaactttaagaccaaatcagaagggcacccctaaaccccggtacaccaaagaaacaccaaatcacaccaaa 24324934  T
Q  341 gaaaattgcaactggacaccgac 363  Q
     || ||||||||| |||||||||    
T  24324935 caagattgcaactagacaccgac 24324957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 1e-68; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 299 - 626
Target Start/End: Original strand, 10248647 - 10248972
Alignment:
Q  299 ccctcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccg 397  Q
    |||||||||| ||| ||| |||||| |||||||||| |||||| ||||||||| || |||||||||||||| |||||||||||| ||||  | |||||||    
T  10248647 ccctcacccccggtacaccagagaaacaccaaatcaagccaaacaaaattgcagctagacaccgactcccgatctcgaagcaaaagtaactggcccaccg 10248746  T
Q  398 aaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctac 497  Q
     |||||| ||||||| ||||| |||||||||||||  |||| ||||||||| |||||||| |||||| ||||| ||  | |||||||||||||| ||| |    
T  10248747 gaaaccaccacacaa-aagtaagacaaacgacaaggcaagtagtggtgcaaacaacaaaccaatcaaaaggaatagactaagctcaacgggacctgctcc 10248845  T
Q  498 ctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaa 597  Q
    ||||||||||| ||||||||||||||| |||||||||  || |||| ||||||| |||||||||||||||||||||||||| |    |||||| ||||||    
T  10248846 ctccaaacaccttaaacaccttaacaa-tccaaaaaactcaaacaagagctagtgacgacgaataaggacccgagtaacagcgacaacctccagaagaaa 10248944  T
Q  598 tcacccccaacaaacacccgcctcctcac 626  Q
    ||| ||||| ||||||||| |||||||||    
T  10248945 tca-ccccagcaaacaccctcctcctcac 10248972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 84 - 626
Target Start/End: Original strand, 17656872 - 17657426
Alignment:
Q  84 aaacacccctcaaaatcaaactcacaatcctgaaactccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctc 183  Q
    |||||||||||||||| |||||| ||||| |||| | ||||||  |||| || ||  |||||||| |||  ||||||||||||| | |||||||||| ||    
T  17656872 aaacacccctcaaaattaaactcccaatcatgaa-caccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatc 17656970  T
Q  184 gacctccgttccatcgaaggaaaccataaaaagcccaaaaccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccata 274  Q
    |||||||| |||| |||| |||||||||||||| ||||||||| |||  | ||||||| | ||       | ||| |||||||||||| |||| ||||||    
T  17656971 gacctccgatccaccgaaagaaaccataaaaagtccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcgacccaccata 17657070  T
Q  275 ctatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtct 372  Q
    || || | |||| | |||||||||||| ||| ||| ||| ||  |||||| ||||||||||||||||| || |||| | || | |||||||||||| |||    
T  17657071 ctttaggtccaacttagaagggcacccctcatccc-ggtacatcagagaaacaccaaatcacgccaaataagattgtagctagccaccgactcccgatct 17657169  T
Q  373 cgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacga----caagataagtggtggtgcaagcaacaaacaaatcaatagg 468  Q
    |||||||||  ||| || |||| || |||||| ||||||| ||||| |||||||||    || ||||   ||||| |||  ||||||| | ||||| ||     
T  17657170 cgaagcaaaattaaccggcccatcggaaaccaacacacaaaaagtatgacaaacgatcgacatgatatacggtggagcacacaacaaatagatcaaaaga 17657269  T
Q  469 aaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacc 568  Q
    ||||   | || ||||||||| ||||| |||||||||||| ||||||||||||||  ||| ||||||||| |||| ||||||| || || || |||||||    
T  17657270 aaaactctcagttcaacgggatccgcttcctccaaacaccataaacaccttaacag-tcccaaaaatgcaaacaagagctagtgacaacaaacaaggacc 17657368  T
Q  569 cgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    ||| |||||||||  |||||||||| |||||||| ||||| |||| ||||||||||||    
T  17657369 cgaataacagaggcagcctccaaaacaaatcacctccaacgaacatccgcctcctcac 17657426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 629
Target Start/End: Complemental strand, 36630583 - 36630495
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcacata 629  Q
    |||| ||||||| |||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||    
T  36630583 acaagagctagtgacgacgaacaaggacccgtgtaacagaggttgcttccaaaggaaatca-ccccaacaagcacccgcctcctcacata 36630495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 626
Target Start/End: Original strand, 34389313 - 34389398
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||| ||||||| |||||||| | ||||||| |||||||||||||| || ||| ||||||| ||||||||| |||||||||||||||    
T  34389313 acaagagctagtgacgacgaacatggacccgtgtaacagaggttgcttctaaaggaaatca-ccccaacaagcacccgcctcctcac 34389398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 12197987 - 12198080
Alignment:
Q  134 acatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaa-accataaaaagcccaaaacca 226  Q
    |||||| |||||||| ||| |||||||||||| ||| |||| |||||||||||||||| ||||| ||| ||| | || ||||||| ||||||||    
T  12197987 acatccgaaaagctcatatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaacatcaaaaaaagctcaaaacca 12198080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 12442415 - 12442508
Alignment:
Q  134 acatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaa-accataaaaagcccaaaacca 226  Q
    |||||| |||||||| ||| |||||||||||| ||| |||| |||||||||||||||| ||||| ||| ||| | || ||||||| ||||||||    
T  12442415 acatccgaaaagctcatatccgaaagatcattgaacttccatcacctctcgacctccgatccattgaaagaacatcaaaaaaagctcaaaacca 12442508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 32066340 - 32066504
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaaca-ccaaatcacgccaaagaaa-att 347  Q
    |||||||||||| | || |||| ||||||  ||||||| || ||||||||| || |||| ||| |||||||||| | |||||||| | |||| ||| |||    
T  32066340 atcaaaagtgatcggcccaccagactatagcaccaaattagcagggcacccctcgcccccggtacactagagaaaaaccaaatcaagtcaaacaaagatt 32066439  T
Q  348 gcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaa 412  Q
    |||||| ||| |||| ||||| |||| |||| ||   || || ||||||||||||||||||||||    
T  32066440 gcaactagaccccgaatcccgatctcaaagccaaatgaaccggcccaccgaaaaccagcacacaa 32066504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 540 - 626
Target Start/End: Original strand, 32066630 - 32066715
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||| ||||||| |||||||| | | ||||  |||||||||||||| || ||| ||||||| ||||||||||||||| |||||||||    
T  32066630 acaagagctagtgacgacgaacatgtacccatgtaacagaggttgcttctaaaggaaatca-ccccaacaaacacccacctcctcac 32066715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 34389050 - 34389214
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggca-ccctcacccctggtgcactagag-aacaccaaatcacgccaaa-gaaaatt 347  Q
    |||||||||||| | || |||| ||||||  ||||||| || |||||| ||||| |||||||| ||| |||| || ||||||||| | ||||  ||||||    
T  34389050 atcaaaagtgatcggcccaccagactatagtaccaaattagcagggcacccctcgcccctggtacaccagagaaaaaccaaatcaagtcaaacaaaaatt 34389149  T
Q  348 gcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaa 412  Q
    ||| || ||| |||||||||| ||||||||| ||   || || || | |||||||||||||||||    
T  34389150 gcagctagaccccgactcccgatctcgaagccaaatgaaccggcctatcgaaaaccagcacacaa 34389214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 37986903 - 37987067
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaaca-ccaaatcacgccaaagaaa-att 347  Q
    ||||||| |||||| || |||| ||||||  ||||||| || ||||||||| || |||| ||| ||| |||||| | |||||||| | |||| ||| | |    
T  37986903 atcaaaaatgattggcccaccagactataacaccaaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaataaagaat 37987002  T
Q  348 gcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaa 412  Q
    |||||| ||| |||||| ||| ||||||||| ||   || || ||||||||||||||||||||||    
T  37987003 gcaactagaccccgactaccgatctcgaagccaaatgaaccggcccaccgaaaaccagcacacaa 37987067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 577 - 626
Target Start/End: Original strand, 15821751 - 15821800
Alignment:
Q  577 agaggttgcctccaaaa-gaaatcacccccaacaaacacccgcctcctcac 626  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  15821751 agaggctgcctccaaaaagaaatcacccc-aacaaacacccgcctcctcac 15821800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 4e-62; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 25 - 613
Target Start/End: Complemental strand, 8297738 - 8297148
Alignment:
Q  25 gaccactgtaaaaaagatatccaatactacccatcgtcactactca---agccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactc 121  Q
    ||||| |||||||| ||| |||||  | ||| ||||||||||||||   | ||||||||||||| ||||||||||||| |||||| | ||| |||| | |    
T  8297738 gaccaatgtaaaaacgatttccaa--ccacctatcgtcactactcactcacccccaaagaaaaa-cacccctcaaaattaaactccccatcatgaa-cac 8297643  T
Q  122 caaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaa 221  Q
    |||| | |||| |||||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||||| | || |||| |||||||||||||| ||||    
T  8297642 caaaaccgagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctcacgacctccgattcaccgaaagaaaccataaaaagtccaa 8297543  T
Q  222 aaccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctgg 311  Q
    ||||| |||  | ||||||| | ||       | ||| ||||||| | |||  || ||||| || ||  |||||||||||||||||||| ||||||  ||    
T  8297542 aaccaaacttgagccaaagaactgactcccgatctcgaatcaaaaattattagcccaccatgctttagaaccaaatcagaagggcacccctcaccctcgg 8297443  T
Q  312 tgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacac 410  Q
    | |||||||||| |||||||||| || ||| ||||||||| || |||||| |||| || |||||||||||| ||||||| ||||| |||||||||| ||     
T  8297442 tacactagagaaacaccaaatcaagcaaaacaaaattgcagctagacaccaactctcgatctcgaagcaaaagtaatcggcccactgaaaaccagcgcag 8297343  T
Q  411 aacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccct 510  Q
    || ||||| |||||| || |||||  | | |||||||| ||||||||||||||| || |||| | | |||| ||||||||||| | |||         ||    
T  8297342 aaaaagtatgacaaatgagaagatgcgcgatggtgcaaacaacaaacaaatcaaaagaaaaatgctcagctaaacgggacccgattcct---------ct 8297252  T
Q  511 aaacaccttaacaactcc-aaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaaca 609  Q
    ||||||||||||||| || |||||||||| ||||  |||||| | |||||| |||||| |||||||||||||   ||||||||| |||| || |||||||    
T  8297251 aaacaccttaacaaccccaaaaaaatgcaaacaagtgctagtgatgacgaacaaggactcgagtaacagaggcaacctccaaaataaattactcccaaca 8297152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 626
Target Start/End: Original strand, 26045768 - 26046385
Alignment:
Q  15 tcatgaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcct 114  Q
    ||||||||  |||||| ||||||| || |||||| ||  |||||||||||||||||  ||||||||||||| ||||||||||||| |||||| |||||||    
T  26045768 tcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactca--ccccaaagaaaaa-cacccctcaaaattaaactctcaatcct 26045864  T
Q  115 gaaactccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaa 214  Q
     |||| ||||||  |||  || ||| |||||||| |||  ||||||||| ||| | |||||  |||  ||||||||| |||  |||  ||||||||||||    
T  26045865 -aaacaccaaagttgagtcacctccgaaaagctcatatctgaaagatcaatcagcttccacagcctaacgacctccgatcccccgagagaaaccataaaa 26045963  T
Q  215 agcccaaaaccacact--atccaaagagcg-------gatatcgcatcaaaagtgattgaccgaccatactatatgaccaaa-tcagaagggcaccc-tc 303  Q
    || ||||||||| |||  | |||||   |        ||| ||| |||||||||||| |    |||| ||| || ||||||| ||| || ||||||| |     
T  26045964 agtccaaaaccaaacttgagccaaaacactaactcccgatctcgaatcaaaagtgatcggttcaccagactttaggaccaaactcaaaaaggcacccctt 26046063  T
Q  304 acccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaac 402  Q
    | ||| ||| ||| |||||| ||||||||||||||||| || |||||| || | |||||||||||||||||||||||||  |||||  ||||||  ||||    
T  26046064 aaccc-ggtacaccagagaaacaccaaatcacgccaaataagattgcagctagccaccgactcccggtctcgaagcaaaattaatctgcccaccagaaac 26046162  T
Q  403 cagcacacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctcca 502  Q
     ||||||||| ||||| ||||||||||| |||| | |||||||||| ||||||||| ||||| || | |||| | ||  ||||  |||||||| |||| |    
T  26046163 tagcacacaaaaagtatgacaaacgacatgatatgcggtggtgcaaacaacaaacatatcaaaagaagaaggctcagtgcaacatgacccgcttcctcta 26046262  T
Q  503 aacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacc 602  Q
    |||||||||||||||| ||  || || |||||  || |||| ||||||| | |||||| ||||||||||||||||||||  | ||||||||||||||| |    
T  26046263 aacaccctaaacacctaaaacac-cccaaaaacacaaacaagagctagtgaagacgaacaaggacccgagtaacagaggcagtctccaaaagaaatcaac 26046361  T
Q  603 cccaacaaacacccgcctcctcac 626  Q
    |||||||||||||||||| |||||    
T  26046362 cccaacaaacacccgcctactcac 26046385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 251 - 626
Target Start/End: Original strand, 13954279 - 13954653
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccctcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgc 349  Q
    |||||||||||| | || |||| ||| || |||||||||||||||   ||||||||   ||| ||| |||||| ||| |||||| | |||| || |||||    
T  13954279 atcaaaagtgatcggcccaccagactttaggaccaaatcagaaggcacccctcaccttcggtacaccagagaaacacaaaatcaagtcaaataagattgc 13954378  T
Q  350 aactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaag 449  Q
    | || |||||||||||  | |||||||||||| |||| || ||||||||||||||||| |||| || || ||||||||||| |||||| || |||||||     
T  13954379 agctagacaccgactcttgatctcgaagcaaaagtaaccggcccaccgaaaaccagcatacaaaaattatgacaaacgacatgataagcggcggtgcaaa 13954478  T
Q  450 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagcta 549  Q
    ||||||||  | ||| ||| |||||  ||| || ||||| ||  || |||||||||||||||||||||||||||||||| | ||| ||| |||| |||||    
T  13954479 caacaaaccgaccaaaaggtaaaggcatagttccacggg-ccaactccctccaaacaccctaaacaccttaacaactcc-agaaacgcaaacaagagcta 13954576  T
Q  550 gtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    || |||||||| || |||| || ||||| | |   |||||| | |||||||||||||||||||||||| ||||||||    
T  13954577 gtgacgacgaacaaagacctgaataacaaacgcaacctccagaggaaatcacccccaacaaacacccgtctcctcac 13954653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 82 - 626
Target Start/End: Original strand, 7195109 - 7195662
Alignment:
Q  82 aaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctc 181  Q
    ||||||| |||||||||| |||||| || |||||||   ||||||| |||| ||||||  ||||||| ||| | |||||| ||||| | ||||| |||||    
T  7195109 aaaaacaaccctcaaaataaaactc-cagtcctgaata-ccaaagctgagccacatccgcaaagctcctatccaaaagattattcagcttccacgacctc 7195206  T
Q  182 tcgacctccgttccatcgaaggaaaccataaaaagcccaaaaccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgacca 272  Q
    |||||||||| |||| ||||  ||||||||||| |||||||  |  |||  | ||||||| | ||       | ||| |||||||||||| | |  ||||    
T  7195207 tcgacctccgatccaccgaaaaaaaccataaaa-gcccaaactctaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggctcacca 7195305  T
Q  273 tactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggt 370  Q
     ||| |||| ||||||||||||||||||| |||||| |||| ||| |||||| ||| ||||||||||||| || |||||| || | |||||||||||| |    
T  7195306 gactttatggccaaatcagaagggcacccctcaccc-tggtacaccagagaaacactaaatcacgccaaacaatattgcagctagccaccgactcccgat 7195404  T
Q  371 ctcgaagcaaacgtaatcgccccaccg-aaaaccagcacacaacaagtaggacaaac-gacaagataagtggtggtgcaagcaacaaacaaatcaatagg 468  Q
    ||||||||||| ||||  | ||||| | ||||||| ||||||| ||||| ||||||  || | ||| || |||||||||| ||||||||| || || |||    
T  7195405 ctcgaagcaaaagtaactggcccactggaaaaccaacacacaaaaagtatgacaaaatgatatgatgagcggtggtgcaaacaacaaacatataaaaagg 7195504  T
Q  469 aaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacc 568  Q
    ||||||   ||| |||  |||| |||| ||||||||||||||||||||||||| ||| | ||| |||| | |||| ||||||| || || || |||||||    
T  7195505 aaaaggcccagcacaaaaggacacgcttcctccaaacaccctaaacaccttaataacccaaaacaatgtaaacaagagctagtgacaacaaacaaggacc 7195604  T
Q  569 cgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    ||||||||| | |  | ||  |||||||||||||  ||| ||||||| ||||||||||    
T  7195605 cgagtaacataagcagtctataaaagaaatcacctacaataaacacctgcctcctcac 7195662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 154 - 534
Target Start/End: Original strand, 14302369 - 14302760
Alignment:
Q  154 cgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaaccacact--atccaaagagcgg-------a 244  Q
    ||||||||||| || | ||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| |||   |||||||| | |       |    
T  14302369 cgaaagatcatgcagcttccaccacctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaaacttgctccaaagaactgactcccaa 14302468  T
Q  245 tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggca-ccctcacccctggtgcactagag-aacaccaaatcacgccaaaga 342  Q
    | ||| | ||||||||||    | |||| ||| || ||||||| |||||||||| |||||||||  | | ||| |||| ||||||| |||||||||||      
T  14302469 tctcgaaccaaaagtgatcagtccaccagactttaggaccaaaacagaagggcatccctcaccctcgatacaccagagaaacaccagatcacgccaaact 14302568  T
Q  343 aaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtg 442  Q
    |  ||||| || ||||| |||||||| |||||||||||| ||||  |  || ||  |||||||||||||| ||| | |||||||||||  ||| |  |||    
T  14302569 agcttgcagctagacacggactcccgatctcgaagcaaaagtaacggggcccccagaaaccagcacacaaaaagaatgacaaacgacataatatgatgtg 14302668  T
Q  443 gtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaa 534  Q
    |||||| ||||||| | ||||| | ||||| | | | |||||||||||||||| |||||||||| | ||||||||| |||||| ||||||||    
T  14302669 gtgcaaacaacaaatagatcaaaacgaaaatgctcaactcaacgggacccgcttcctccaaacatcttaaacacctaaacaaccccaaaaaa 14302760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 25992283 - 25992077
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagcccc-aaagaaaaaacacccctcaaaatcaaactcacaatcctgaa 117  Q
    |||||| ||||||||||||| |||||||||||| |||||||| ||||||||  ||||| |||||||||| ||||||||||| |||||||  | |||||||    
T  25992283 gaaagcaaccactgtaaaaacgatatccaataccacccatcgccactactctcgcccccaaagaaaaaatacccctcaaaa-caaactcctagtcctgaa 25992185  T
Q  118 actccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagc 217  Q
     | |||||||||||| || | |||||||||  |   |||||||||||| | | |||| || ||| ||||||||| ||||||||| |||| ||||||||||    
T  25992184 -caccaaagcagagccacctacaaaaagcttctccccgaaagatcattaagcttccaacatctcacgacctccgatccatcgaaagaaatcataaaaagc 25992086  T
Q  218 ccaaaacca 226  Q
    |||||||||    
T  25992085 ccaaaacca 25992077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 33258688 - 33258889
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||||||||||||||||||| |||||||||||| | |||||| |||||||| | ||| |||||||||||||||| ||||| |||||||  |  |||| ||    
T  33258688 gaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactc-acccctaaagaaaaaacaccccacaaaaacaaactcctagacctg-aa 33258785  T
Q  119 ctccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcc 218  Q
    | ||||||| |||| |||||||| |||||| |    || | |||||||| | ||||| | ||||||||||||| |||| |||| ||||||||||||||||    
T  33258786 caccaaagctgagccacatccaacaagctcctccctgagaaatcattcagcttccactatctctcgacctccgatccaccgaaagaaaccataaaaagcc 33258885  T
Q  219 caaa 222  Q
    ||||    
T  33258886 caaa 33258889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 386
Target Start/End: Original strand, 7391944 - 7392213
Alignment:
Q  123 aaagcagagcaacatccaaaaagctcttattcga-aagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaa 221  Q
    |||||||||| |||||| |||||||| ||| | | ||||||| ||  | || |||||||||||||||||| |||| |||| |||||||||||| ||||||    
T  7391944 aaagcagagccacatccgaaaagctcctatccaataagatcaatccgcttcaaccacctctcgacctccgatccaccgaaagaaaccataaaa-gcccaa 7392042  T
Q  222 aaccacactat-ccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggt 312  Q
    |||||    || ||||||| | ||       | ||| |||||||||||| |  | |||| ||| || ||||||||||||||||||||| ||||||  |||    
T  7392043 aacca----atgccaaagaactgactcccgatctcgaatcaaaagtgatcggtccaccagactttaggaccaaatcagaagggcacccctcaccctcggt 7392138  T
Q  313 gcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaa 386  Q
     ||  |||||| |||||||||| |||||| || |||||| || |||||| ||||||| |||||||||||| ||||    
T  7392139 acatcagagaaacaccaaatcaagccaaacaagattgcagctagacaccaactcccgatctcgaagcaaaagtaa 7392213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 21402778 - 21402848
Alignment:
Q  156 aaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacca 226  Q
    |||||||| ||||| ||||||||||||| ||||||  |||| |||| ||||||||||||||| ||||||||    
T  21402778 aaagatcaatcaacttccaccacctctcaacctccaatccaccgaaagaaaccataaaaagctcaaaacca 21402848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 483 - 624
Target Start/End: Complemental strand, 29087350 - 29087211
Alignment:
Q  483 aacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggt 582  Q
    |||||||| |||  ||||||||| || ||||||||| ||| || ||||||||  || |||| ||||||| |||||||| | ||||||  |||||||||||    
T  29087350 aacgggacacgcatcctccaaactccgtaaacacctaaaccac-ccaaaaaacacaaacaagagctagtgacgacgaacatggacccatgtaacagaggt 29087252  T
Q  583 tgcctccaaaagaaatcacccccaacaaacacccgcctcctc 624  Q
    ||| |||| |  |||||| ||||||| |||||| ||||||||    
T  29087251 tgcttccatagaaaatca-ccccaaccaacacctgcctcctc 29087211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 505 - 615
Target Start/End: Original strand, 24072564 - 24072671
Alignment:
Q  505 caccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccc 604  Q
    ||||||||||||||||||||| ||||||  |  | |||| ||||||  || ||||||| |||||||| |||||||||  ||||| ||||||||||||||     
T  24072564 caccctaaacaccttaacaac-ccaaaactt--aaacaagagctagcgacaacgaatatggacccgaataacagaggcggcctctaaaagaaatcaccca 24072660  T
Q  605 caacaaacacc 615  Q
    |||||| ||||    
T  24072661 caacaaccacc 24072671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 14302252 - 14302362
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||| |||||| |||||||| ||||||||| || |||  |||||||||||| | |||||||| ||||| |||||||||||| |||||| || ||||| ||    
T  14302252 gaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactc-atccccaaag-aaaaatacccctcaaaattaaactcccactcctg-aa 14302348  T
Q  119 ctccaaagcagagc 132  Q
    | ||||||| ||||    
T  14302349 caccaaagctgagc 14302362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 33110006 - 33110050
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtca 63  Q
    |||| ||||||||||||||| |||||||||||| |||||||||||    
T  33110006 gaaaacgaccactgtaaaaacgatatccaataccacccatcgtca 33110050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 13954190 - 13954245
Alignment:
Q  171 tccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacca 226  Q
    |||||||||| || || |||| |||| |||| ||||||||||||||||||||||||    
T  13954190 tccaccacctttcaacttccgatccaccgaaagaaaccataaaaagcccaaaacca 13954245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 412
Target Start/End: Complemental strand, 18593248 - 18593115
Alignment:
Q  282 accaaatcagaagggca-ccctcacccctggtgcactagagaaca-ccaaatcacgccaaagaaa-attgcaactggacaccgactcccggtctcgaagc 378  Q
    ||||||| || |||||| ||||| |||| ||| ||| |||||| | |||||||| | |||| ||| ||||||||| ||| |||||||||| |||||||||    
T  18593248 accaaattagcagggcatccctcgcccccggtacacgagagaaaaaccaaatcaagtcaaacaaagattgcaactagaccccgactcccgatctcgaagc 18593149  T
Q  379 aaacgtaatcgccccaccgaaaaccagcacacaa 412  Q
     ||   || || ||||||||||| ||||||||||    
T  18593148 caaatgaaccggcccaccgaaaatcagcacacaa 18593115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 121 - 626
Target Start/End: Original strand, 42043 - 42561
Alignment:
Q  121 ccaaagcagagcaacatccaaaaagctcttattcgaaa-gatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagccc 219  Q
    |||||||||||| |||| | |||||||| ||| ||||| ||| ||||| | ||||||| ||||||||||||| ||||  ||| ||||||||||||| |||    
T  42043 ccaaagcagagccacattcgaaaagctcctatccgaaaagattattcagcttccaccaactctcgacctccgatccactgaaagaaaccataaaaatccc 42142  T
Q  220 aaaaccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccct 309  Q
    ||||||| |||  | ||||||| | ||       | ||| |||||||||||| | || |||| ||| || ||| ||||||||||||||||| |||||  |    
T  42143 aaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggactaaatcagaagggcacccctcaccttt 42242  T
Q  310 ggtgcactagagaa-caccaaatcacgccaaagaaa-attgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagca 407  Q
    |||  || |||||| || ||||| | ||||||  || | |||| || |||| ||||||||| ||||||||||||  ||| || |||| ||  ||||||||    
T  42243 ggtataccagagaaacatcaaattaagccaaaacaagaatgcagctagacatcgactcccgatctcgaagcaaaattaaccgacccatcgggaaccagca 42342  T
Q  408 cacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacac 507  Q
     ||||  |||| ||||||||||| ||||  ||||||||||| ||||||||| ||| | ||||||||| ||||||||| | || | ||| |||||||||||    
T  42343 tacaaacagtaagacaaacgacatgatagatggtggtgcaaacaacaaacatatccaaaggaaaaggcttagctcaatgagatcggctccctccaaacac 42442  T
Q  508 cctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacg-aataaggacccgagtaacagaggttgcctccaaaagaaatcaccccca 606  Q
    | ||||||| |||||||| || ||||| ||| |||| ||||||| |||||| || |||||||||||||| |||||   |||||| |||||||||||||||    
T  42443 cataaacactttaacaac-cccaaaaacgcaaacaagagctagtgacgacgaaacaaggacccgagtaatagaggcaacctccagaagaaatcaccccca 42541  T
Q  607 acaaacacccgcctcctcac 626  Q
    ||||||||||||||||||||    
T  42542 acaaacacccgcctcctcac 42561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 9e-57; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 141 - 626
Target Start/End: Complemental strand, 25647841 - 25647341
Alignment:
Q  141 aaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaaccaca--ct--atccaa 236  Q
    |||||||| ||  |||||||||||||||| | ||||||||||||||||||| |||| | || |||||||||||||||| ||||||| |  ||  | ||||    
T  25647841 aaaagctcataaccgaaagatcattcaactttcaccacctctcgacctccgatccaccaaaagaaaccataaaaagcctaaaaccaaaaacttaagccaa 25647742  T
Q  237 agagcg-------gatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccct-cacccctggtgcactagagaa-cacc 327  Q
    ||| |        ||| ||| |||||||||||| | ||   || ||| || |||||||||||||||||||||| ||| || ||| ||| |||||| ||||    
T  25647741 agaaccaactcccgatctcgaatcaaaagtgataggcccgtcagactttaggaccaaatcagaagggcacccttcactcccggtacaccagagaaacacc 25647642  T
Q  328 aaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacac-aacaagtaggacaaac 426  Q
    ||||||||||||| | ||||||| || |||||||||||||| |||||||||||| |||| || |||| || |||||| ||||| || ||| | |||||||    
T  25647641 aaatcacgccaaacagaattgcagctagacaccgactcccgttctcgaagcaaaagtaaccggcccatcggaaaccaacacacaaaaaagaatgacaaac 25647542  T
Q  427 gacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaact 526  Q
    |||| ||||    ||||||||| |||||||||  |||| |||||||||   | ||||||||||| |||| |||||||||||||||||||||||||||||     
T  25647541 gacatgatatacagtggtgcaaacaacaaacaggtcaaaaggaaaaggcacaactcaacgggactcgcttcctccaaacaccctaaacaccttaacaacc 25647442  T
Q  527 ccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacc-cccaacaaacacccgcctcctca 625  Q
      |||||   |  |||| ||||||| |||||||| |||||||||||||||| |||   ||||| |||  ||||||| ||||  |||||||||||||||||    
T  25647441 ttaaaaatcacgaacaagagctagtgacgacgaacaaggacccgagtaacaaaggcaacctcccaaatgaatcaccacccacaaaacacccgcctcctca 25647342  T
Q  626 c 626  Q
    |    
T  25647341 c 25647341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 19 - 626
Target Start/End: Complemental strand, 37123654 - 37123050
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||| ||||||||||||||| ||||||||| || |||  | |||||||||||  | |||||||  || |||||||| |||| |||||| || ||| |||     
T  37123654 gaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcac-cgccaaagatgaa-cacccctccaaattaaactctcagtccagaac 37123557  T
Q  119 ctccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcc 218  Q
     || ||||| |||| ||||| |||| |||| | |  |||||||||| || | |||||||||| |||| ||||| ||| ||||| ||||||||||||||||    
T  37123556 atc-aaagctgagccacatcgaaaa-gctcatgtctgaaagatcatacagcttccaccacctatcgaactccgatcc-tcgaaagaaaccataaaaagcc 37123460  T
Q  219 caaaaccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccc 308  Q
    |||||||| | |  ||||||||| | ||       | ||| |||||||||||| | || |||| | | || ||||||| || |||||||||| || ||      
T  37123459 caaaaccaaatttgatccaaagaactgactcccaatctcgaatcaaaagtgatcggcccaccaaaatttaggaccaaaacataagggcacccctctcctt 37123360  T
Q  309 tggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagca 407  Q
     ||| ||  |||||| ||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||| |||||||        ||||||||||    
T  37123359 cggtacatcagagaaacaccaaatcacgccaaacaaaattgcagctagacaccgactcccgatctcgaagcaaaagtaatcg--------aaaaccagca 37123268  T
Q  408 cacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacac 507  Q
    ||||| ||||| |||||| | || |||  | |  ||||||| |||| | || ||||| ||||||||  | | ||||| || ||||||| |||||||||||    
T  37123267 cacaaaaagtatgacaaatg-catgatgtgcgaaggtgcaaacaaccagcagatcaaaaggaaaagactcaactcaatggaacccgcttcctccaaacac 37123169  T
Q  508 cctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaa 607  Q
    ||||||| |||||||||| ||||||||  || |||| ||||||| |||||||| ||||||||||||| ||||||  |||||| ||||||||||||| |||    
T  37123168 cctaaactccttaacaaccccaaaaaacacaaacaagagctagtgacgacgaacaaggacccgagtaccagaggccgcctccgaaagaaatcaccctcaa 37123069  T
Q  608 caaacacccgcctcctcac 626  Q
    |||||||| ||||||||||    
T  37123068 caaacacctgcctcctcac 37123050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 283 - 626
Target Start/End: Original strand, 4464013 - 4464358
Alignment:
Q  283 ccaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaa 380  Q
    ||||||||||||||||||| ||||||  ||| ||| |||||| ||||||||||||||| | || ||||||||| |||||||||||||| |||||||||||    
T  4464013 ccaaatcagaagggcacccctcaccctcggtacac-agagaaacaccaaatcacgccacacaagattgcaactagacaccgactcccgatctcgaagcaa 4464111  T
Q  381 acgtaatcgccccaccg-aaaaccagcacacaacaagtaggac-aaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggttta 478  Q
    | |||| || ||||||| ||||||| ||||||| ||| | ||| ||||||||||||||| |||||||||| ||||||||  ||||| ||||||| | | |    
T  4464112 aagtaaccggcccaccgaaaaaccaacacacaaaaaggatgacaaaacgacaagataagcggtggtgcaaacaacaaaccgatcaaaaggaaaaagctca 4464211  T
Q  479 gctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacag 578  Q
    ||  || || ||||||| ||||||||| || ||||||||| |||||| |||||||| ||| |||||||||||| ||||| || |||||| | | ||||||    
T  4464212 gcagaaaggaacccgct-cctccaaactccataaacacctaaacaaccccaaaaaacgcaaacaaaagctagtgacgacaaacaaggactccattaacag 4464310  T
Q  579 aggttgcctc-caaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    ||   |||||  ||||||||||| ||||| ||||||||||||| |||||    
T  4464311 agtcagcctctaaaaagaaatca-ccccatcaaacacccgcctactcac 4464358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 281 - 626
Target Start/End: Complemental strand, 14193946 - 14193596
Alignment:
Q  281 gaccaaatcagaagggcaccc-tcacccctggtgcactagagaacac--caaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaag 377  Q
    ||||||||||||||||||||| |||| || ||| ||| | |||||||  |||||||||||||  | ||||| | || |||||||||||||| | ||||||    
T  14193946 gaccaaatcagaagggcacccctcactcccggtacaccaaagaacacaccaaatcacgccaagcagaattgtagctagacaccgactcccgatatcgaag 14193847  T
Q  378 caaacgtaatcgccccaccgaaaaccagcacacaacaa-gtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtt 476  Q
    |||| ||| ||| | || |  |||| ||||||||| || | | ||||||||||  ||||   ||||||| || ||| |||| |||||| |||||||||      
T  14193846 caaaagtagtcggcgcatcagaaactagcacacaaaaaagaatgacaaacgacttgatatacggtggtgtaaacaagaaacgaatcaaaaggaaaaggca 14193747  T
Q  477 tagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaac 576  Q
     | ||||||||||| |||| |||||||| |||||||||||||||||||| |||||||  ||  |||| ||||||| ||||||||||||||||||||||||    
T  14193746 caactcaacgggactcgcttcctccaaaaaccctaaacaccttaacaaccccaaaaatcgcgaacaagagctagtgacgacgaataaggacccgagtaac 14193647  T
Q  577 agaggttgcctccaaaagaaatcacc-cccaacaaacacccgcctcctcac 626  Q
    | |||   ||||| |||  ||||||| ||||  ||||||||| ||||||||    
T  14193646 aaaggcaacctcccaaatgaatcacctcccacaaaacacccgtctcctcac 14193596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 19 - 629
Target Start/End: Original strand, 14755070 - 14755688
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccc-tcaaaatcaaactcacaatcctgaa 117  Q
    ||||||||||| |||||||| |||||| ||||| | |||||| | ||||   | |||||||| ||||||||||| | |||| |||||||  || ||| ||    
T  14755070 gaaagcgaccattgtaaaaacgatatctaataccatccatcgccgctacc--acccccaaaggaaaaacacccccttaaaaacaaactcttaaaccttaa 14755167  T
Q  118 actccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagc 217  Q
     | ||||||| |||| |||||||| |||||| |   |||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||| |||||||||    
T  14755168 -caccaaagctgagccacatccaacaagctcatccccgaaagatcattcaacttccaccatctctcgacctccgatccatcgaaagaaacaataaaaagc 14755266  T
Q  218 ccaaaaccacact---atccaaaga-------gcggatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggca-ccctcacc 306  Q
    ||||| |||  ||   | |||||||        | ||| | | |||||||||||| | || |||| ||| ||  || |||  | ||||||| ||||||||    
T  14755267 ccaaatccaacctcgaaaccaaagaactgactcccgatcttgaatcaaaagtgatcggcccaccagactttagcacaaaa--aaaagggcacccctcacc 14755364  T
Q  307 cctggtgcactagag-aacaccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccag 405  Q
       ||| ||| |||| ||||||||| | ||| ||| || |||||| || || ||||||||||| |||||||||||| |||| || |||| || ||| |||    
T  14755365 ttcggtacaccagagaaacaccaaaacgcgcgaaacaagattgcagctagataccgactcccgatctcgaagcaaaagtaaccggcccatcggaaatcag 14755464  T
Q  406 cacacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctc-aacgggacccgctacctccaaa 504  Q
    ||||||| ||| | | |||| |||| |||| | | | |||||| |||| |||||||||| |||| |||  | |  || |||| ||| |||| ||||||||    
T  14755465 cacacaaaaagaatggcaaatgacatgatatgcgatagtgcaaacaacgaacaaatcaaaaggagaagactcatttcaaacgagactcgcttcctccaaa 14755564  T
Q  505 caccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaag--aaatcacc 602  Q
    |||||||   ||||||||||  |||| |||  || |||| ||||||| |||||| |||  ||| ||||||||||| |||||||||||| |  ||| ||||    
T  14755565 cacccta---accttaacaatcccaacaaacacaaacaagagctagtgacgacggatacagacacgagtaacagaagttgcctccaaacggaaaaacacc 14755661  T
Q  603 cccaacaaacacccgcctcctcacata 629  Q
    |||||||||||||| |||||| |||||    
T  14755662 cccaacaaacaccctcctcctgacata 14755688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 14879705 - 14879506
Alignment:
Q  24 cgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactcca 123  Q
    ||||||||| ||||| ||||||||| || || ||||||||||| |||  |||| ||  |||||||||||||||||| |||||| ||  | |||| | |||    
T  14879705 cgaccactgaaaaaacgatatccaacaccacacatcgtcactattca--ccccgaaagaaaaacacccctcaaaattaaactcccagacttgaa-cacca 14879609  T
Q  124 aagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaa 223  Q
    || | |||| |||||| |||||||| |||  ||||||||||| | | ||||||||||||||||||||  |||| |||| |||||||||||||| ||||||    
T  14879608 aacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctctcgacctcctatccaccgaaagaaaccataaaaagtccaaaa 14879509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 28937521 - 28937721
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    ||||| |||||||||||||| |||||||||||| |||||||| |||||||| | | ||||  ||||||||||||| |||| |||||||  |  |||| ||    
T  28937521 gaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactc-acctccaagtaaaaaacacccctaaaaaacaaactcctagacctg-aa 28937618  T
Q  119 ctccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcc 218  Q
    |  |||||  |||| ||||||||||||||| |    |||| |||||||| | ||||||| |||| |||||||| |||| |||| ||||||||||||||||    
T  28937619 catcaaag-tgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcc 28937717  T
Q  219 caaa 222  Q
    ||||    
T  28937718 caaa 28937721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 41039417 - 41039332
Alignment:
Q  40 gatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactccaaa 125  Q
    ||||| ||||||||| |||| ||||||||||  ||| ||| ||||||||| ||||||||||||||||||| |||| ||||||||||    
T  41039417 gatatacaatactacacatcttcactactcacccccaaaaaaaaaaacacacctcaaaatcaaactcacagtcctcaaactccaaa 41039332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 450 - 626
Target Start/End: Complemental strand, 47235551 - 47235376
Alignment:
Q  450 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagcta 549  Q
    ||||||||||||||| ||||||||| | | | ||||| ||| |||  ||||||||| || ||||||||| ||| || | ||||||  || |||| |||||    
T  47235551 caacaaacaaatcaaaaggaaaaggctcaacacaacgtgacacgcaccctccaaactccgtaaacacctaaaccacccaaaaaaacacaaacaagagcta 47235452  T
Q  550 gtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |  |||| ||| | ||||||| |||||| ||||||| || ||| ||||||| ||||||| ||||||| |||||||||    
T  47235451 gagacgatgaacatggacccgtgtaacaaaggttgcttctaaaggaaatca-ccccaaccaacacccacctcctcac 47235376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 603
Target Start/End: Complemental strand, 20611614 - 20611466
Alignment:
Q  454 aaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaa 553  Q
    ||||||||||| ||||||||| | | | ||||| ||| |||  |||||||||  | ||||||||| ||| || |||||||   || |||| |||||||||    
T  20611614 aaacaaatcaaaaggaaaaggctcaacacaacgtgacacgcaccctccaaacttcgtaaacacctaaactac-ccaaaaagcacaaacaagagctagtaa 20611516  T
Q  554 cgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcaccc 603  Q
    |||| || | ||||||| |||||||||||||| || ||| ||||||||||    
T  20611515 cgacaaacatggacccgtgtaacagaggttgcttctaaaggaaatcaccc 20611466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 282 - 381
Target Start/End: Original strand, 23328426 - 23328526
Alignment:
Q  282 accaaatcagaagggcaccc-tcacccctggtgcactagagaacaccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaa 380  Q
    |||||||||  ||||||||| || |||| ||| ||| ||||||||||| |||| | |||| ||||||||| || |||||| ||||||| |||||||||||    
T  23328426 accaaatcaacagggcacccctcgcccccggtacaccagagaacaccatatcaagtcaaacaaaattgcagctagacaccaactcccgatctcgaagcaa 23328525  T
Q  381 a 381  Q
    |    
T  23328526 a 23328526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 33143891 - 33143956
Alignment:
Q  158 agatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaa 223  Q
    |||||| ||| | ||||||||||| ||||||| | |||| |||| |||||||||||||||||||||    
T  33143891 agatcaatcagcttccaccacctcgcgacctctgatccaccgaaagaaaccataaaaagcccaaaa 33143956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 622
Target Start/End: Complemental strand, 19176249 - 19176168
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcc 622  Q
    |||| ||||||| |||| ||| || |||||| |||||| ||||| | |||||| ||||||| ||||||||| |||||||||||    
T  19176249 acaagagctagtgacgatgaacaaagacccgtgtaacaaaggttacttccaaaggaaatca-ccccaacaagcacccgcctcc 19176168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 432
Target Start/End: Original strand, 34475893 - 34475983
Alignment:
Q  342 aaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaag 432  Q
    ||||||||| || ||| |||||||||| ||||||||| ||   ||||| |||| ||||||||||||||| | | ||| |||||| ||||||    
T  34475893 aaaattgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacgatatgtaagacaaaagacaag 34475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 418
Target Start/End: Complemental strand, 19176538 - 19176369
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccctcacccctggtgcactagagaaca-ccaaatcacgccaaagaaa-attg 348  Q
    |||||||||||| | || |||| ||| ||  ||||||| || ||||||||||||| || ||| ||  |||||| | |||||| | | |||| ||| ||||    
T  19176538 atcaaaagtgatcggcccaccagactttagaaccaaattagcagggcaccctcactcccggtacatcagagaaaaaccaaattaagtcaaacaaagattg 19176439  T
Q  349 caactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagta 418  Q
    || || ||| |||||||| | ||||||||| || | || |  |||||||||||||||||||||| |||||    
T  19176438 cagctagaccccgactcctgatctcgaagccaaaggaaccagcccaccgaaaaccagcacacaataagta 19176369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 626
Target Start/End: Original strand, 34476046 - 34476173
Alignment:
Q  497 cctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaa 596  Q
    ||||||||| || ||||||||| ||| |||| |||||   || |||| ||||||  |||||||| | ||||||| |||||| ||||||| |   || |||    
T  34476046 cctccaaactccgtaaacacctaaaccactc-aaaaagcacaaacaagagctagagacgacgaacatggacccgtgtaacataggttgctttttaaggaa 34476144  T
Q  597 atcacccccaacaaacacccgcctcctcac 626  Q
    |||||||| ||||||||||| |||||||||    
T  34476145 atcacccc-aacaaacacccccctcctcac 34476173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 626
Target Start/End: Complemental strand, 45163581 - 45163509
Alignment:
Q  553 acgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||||||| | ||||||| |||||| || |||| || ||| ||||||||||| |||| ||||||||||||||||    
T  45163581 acgacgaacatggacccgtgtaacaaagattgcttctaaaggaaatcacccc-aacatacacccgcctcctcac 45163509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 281 - 626
Target Start/End: Complemental strand, 36713 - 36362
Alignment:
Q  281 gaccaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagc 378  Q
    ||||||||||||||||||||| |||| |  ||| ||| |||||| ||||||||||||||||| ||||||||| || |||||||||||| | ||||||| |    
T  36713 gaccaaatcagaagggcacccctcactctcggtacaccagagaaacaccaaatcacgccaaacaaaattgcagctagacaccgactcctgatctcgaatc 36614  T
Q  379 aaacgtaatcgccccaccgaaaaccagcacacaacaa-gtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggttt 477  Q
    |||  |||||| ||||||| |||||| ||||||| || | | |||||| |||| |||| | |||||||||| ||||||||| ||||| ||||||||        
T  36613 aaaattaatcggcccaccggaaaccaacacacaaaaaagaatgacaaatgacatgatatgcggtggtgcaaacaacaaacatatcaaaaggaaaagtcac 36514  T
Q  478 agctcaacgggacccgctacctccaaacaccctaaa-caccttaacaactccaaaaaat-gcatacaaaagctagtaacgacgaataaggacccgagtaa 575  Q
    ||||||||| || ||||| |||| |||||||||||| |||||||||||| ||||||||  |   |||| ||||| | |||||||| ||||||||||||||    
T  36513 agctcaacgagatccgcttcctctaaacaccctaaaacaccttaacaaccccaaaaaaacgtgaacaagagctactgacgacgaacaaggacccgagtaa 36414  T
Q  576 cagaggttgcctccaaaagaaatcacc-cccaacaaacacccgcctcctcac 626  Q
    ||||||   ||||| |||||||||||| ||||  ||||||| ||||||||||    
T  36413 cagaggcaacctcccaaagaaatcaccacccacaaaacacctgcctcctcac 36362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 36864 - 36779
Alignment:
Q  141 aaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacca 226  Q
    |||||||| ||  ||||||| |||||||| |||||||| |||||||||||| |||| |||| |||| ||||||||| |||||||||    
T  36864 aaaagctcctaaccgaaagaccattcaacttccaccacatctcgacctccgatccaccgaaagaaatcataaaaagaccaaaacca 36779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 5e-46; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 164 - 534
Target Start/End: Original strand, 22811109 - 22811490
Alignment:
Q  164 ttcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaaccacact--atccaaagagcgga-------tatcgcatca 254  Q
    |||||| ||||||||||||| ||||||  ||||||||  |||||||||||||||| ||||||| |||  | ||||||| | ||       | ||| || |    
T  22811109 ttcaacttccaccacctctcaacctccaatccatcgagagaaaccataaaaagcctaaaaccaaacttgagccaaagaactgactcccgatctcgaataa 22811208  T
Q  255 aaagtgattgaccgaccatactatatgaccaaatcagaagggcac-cctcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaac 352  Q
    ||| |||| | || |||| ||| || ||||||||||||||||||| ||||||||| | | ||| |||||| ||||||||||| ||||| |||||||||||    
T  22811209 aaaatgatcggcccaccagactttaagaccaaatcagaagggcactcctcacccc-gatacaccagagaaacaccaaatcacaccaaacaaaattgcaac 22811307  T
Q  353 tggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacac-aacaagtaggacaaacgacaagataagtggtggtgcaagc- 450  Q
    | |||||| | | ||| |||||||||||| |||| || |||||||||||||||||||| || ||| | |||||||||| | ||| | ||| |||||| |     
T  22811308 tagacaccaagttccgatctcgaagcaaaagtaaccgacccaccgaaaaccagcacacaaaaaagaatgacaaacgac-atatatgcggtagtgcaaaca 22811406  T
Q  451 aacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaa 534  Q
    || ||||| ||||| ||||||||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||  |||||||    
T  22811407 aaaaaacatatcaaaaggaaaaggcttagatcaacgggacccgcttcctccaaactccctaaacaccttaacaaccacaaaaaa 22811490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 56 - 514
Target Start/End: Complemental strand, 25753409 - 25752942
Alignment:
Q  56 catcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagcagagcaacatccaaaaagctcttattcg 155  Q
    |||||||||||||||  ||||||||||||| ||||||||||||| |||||  || |||||||  || ||||  || | ||||||||||||||  | | ||    
T  25753409 catcgtcactactcac-ccccaaagaaaaa-cacccctcaaaattaaactttcagtcctgaacatc-aaagttgaaccacatccaaaaagcttctctccg 25753313  T
Q  156 aaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaaccacact--atccaaagagcgga-------ta 246  Q
    |||||||||||| | |||||  ||| |||||||||| |||| |||| ||||| ||||||||||||||| || |||  | ||||||| | ||       |     
T  25753312 aaagatcattcagcttccactgcctatcgacctccgatccaccgaaagaaacaataaaaagcccaaaatcaaacttgagccaaagaactgactcccgatc 25753213  T
Q  247 tcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcac-cctcacccctggtgcactagagaa-caccaaatcacgccaaagaaa 344  Q
    ||| |||||||||||| | || |||| ||| || |||||||| ||| |||||| ||||||| | ||| ||| |||||| ||||| ||||||||||| ||     
T  25753212 tcgaatcaaaagtgatcgccccaccagactttaggaccaaataagacgggcactcctcacctccggtacaccagagaaacaccacatcacgccaaacaag 25753113  T
Q  345 attgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggt 444  Q
    |||||| || |||||||||||||| ||||||||||||  ||| |  |||| || ||||||||| |||| ||||| | |||||||||  ||| ||||| ||    
T  25753112 attgcagctagacaccgactcccgatctcgaagcaaaattaagctgcccatcggaaaccagcaaacaaaaagtaaggcaaacgacataatatgtggttgt 25753013  T
Q  445 gcaagcaacaaacaaatcaataggaaaaggtttagct-caacgggacccgctacctccaaacaccctaaac 514  Q
    |||| ||||||| | ||||| ||||||||||| | || ||||  |||||||| | ||||||||||||||||    
T  25753012 gcaaacaacaaatatatcaaaaggaaaaggttcaactccaacatgacccgcttcttccaaacaccctaaac 25752942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 24 - 222
Target Start/End: Original strand, 16832833 - 16833028
Alignment:
Q  24 cgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactcca 123  Q
    ||||| ||||||||||||||||||| || |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||| || || ||| |||    
T  16832833 cgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactca--ccccaaagaaaaaacacccctcaaaattaaactcacagtcttg-aacacca 16832929  T
Q  124 aagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaa 222  Q
    |||  |||| |||||| |||||||| ||| | |||||||||||| | || | ||||||| ||| ||||  |||  ||| ||||||||||||||||||||    
T  16832930 aagttgagccacatccgaaaagctcatatcccaaagatcattcagcttcaatcacctcttgacttccgaaccactgaaagaaaccataaaaagcccaaa 16833028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 48098603 - 48098403
Alignment:
Q  24 cgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaactcca 123  Q
    ||||||||||||||| ||||||||  || |||| |||||||||||||  |||||||||||| |||||||| ||||  |||||| || || | |||| |||    
T  48098603 cgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcac-ccccaaagaaaatacacccctaaaaaataaactcccagtctt-aaacacca 48098506  T
Q  124 aagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaa 223  Q
    |||  |||| |||||| |||||||| |||  |||||||| |||| | |||||||||||||||||| || ||||||||| ||||| |||||||||||||||    
T  48098505 aagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctctcgaccttcgatccatcgaaagaaactataaaaagcccaaaa 48098406  T
Q  224 cca 226  Q
    |||    
T  48098405 cca 48098403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 121 - 402
Target Start/End: Original strand, 53823326 - 53823619
Alignment:
Q  121 ccaaagcagagcaacatccaaaaagctcttattcgaaa-gatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagccc 219  Q
    ||||||| |||| |||||| |||||||| ||| | ||| ||||| ||||| |||||||||||||||||| || || | |||| ||||||||||||| |||    
T  53823326 ccaaagctgagccacatcctaaaagctcctatccaaaaagatcaatcaacttccaccacctctcgaccttcgatcaaccgaaagaaaccataaaaaaccc 53823425  T
Q  220 aaaaccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggca-ccctcacccct 309  Q
    ||||||| |||  | ||||||| | ||       | ||| ||||||||||||||  | |||| ||| ||||||||||||||||||||| |||||||| |     
T  53823426 aaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagtgattggtccaccagactttatgaccaaatcagaagggcacccctcacctcc 53823525  T
Q  310 ggtgcactagag-aacaccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaac 402  Q
    ||| ||| |||| |||||||| ||| |||||  || ||||||  | |||||||||||||| |||||||||||| |||| || |||||| |||||    
T  53823526 ggtacaccagagaaacaccaagtcaagccaagcaagattgcagttagacaccgactcccgatctcgaagcaaaagtaaccggcccaccaaaaac 53823619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 41117835 - 41117977
Alignment:
Q  82 aaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctc 181  Q
    |||||||||||||| ||| |||||| | ||| |||| | ||||| | |||| || |||  ||||||| |||||||||||||||||| | |||||||||||    
T  41117835 aaaaacacccctcagaataaaactcccgatcatgaa-caccaaacctgagccacctccgcaaagctcctattcgaaagatcattcagcttccaccacctc 41117933  T
Q  182 tcgacctccgttccatcgaaggaaaccataaaaagcccaaaacc 225  Q
    |||||||| | ||||||||| |||||||||||||||||||||||    
T  41117934 tcgacctctgatccatcgaaagaaaccataaaaagcccaaaacc 41117977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 49528285 - 49528143
Alignment:
Q  82 aaaaacacccctcaaaatcaaactcacaatcctgaaactccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctc 181  Q
    |||||||||||||||||| |||||| || || |||| | ||||||| || | ||||||  ||||||  ||| |||||||||||||| | |||||||||||    
T  49528285 aaaaacacccctcaaaataaaactctcagtcttgaa-caccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctc 49528187  T
Q  182 tcgacctccgttccatcgaaggaaaccataaaaagcccaaaacc 225  Q
     ||||||||| |||| |||| |||||||||||||||||||||||    
T  49528186 ccgacctccgatccaccgaaagaaaccataaaaagcccaaaacc 49528143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 251 - 621
Target Start/End: Original strand, 31050707 - 31051076
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaacaccaaatcacgccaaagaaaattgc 349  Q
    |||||||||||| | || |||| ||| ||  |||||||||| ||||||||| || |||| ||| ||  | ||||||||| |||| | |||| |  |||||    
T  31050707 atcaaaagtgatcggcccaccagactttagaaccaaatcagtagggcacccctcgcccccggtacatcaaagaacaccatatcaagtcaaacaggattgc 31050806  T
Q  350 aactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaag 449  Q
    | || | ||||||||||||||||||||||||| |||| || ||||||| |||||| |||| || ||| | |||| |||||| |||||| ||||||||||     
T  31050807 agctagtcaccgactcccggtctcgaagcaaaagtaaccggcccaccggaaaccaacacataataagcaagacagacgacatgataagcggtggtgcaaa 31050906  T
Q  450 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctcc-aaacaccctaaacacctt-aacaactccaaaaaatgcatacaaaagc 547  Q
    | || |||| ||||| ||||| ||  | | | ||||||||  |||  ||||| |||| ||||||||||||| |||||| |||||||   || |||| |||    
T  31050907 cgacgaacacatcaaaaggaagagactcatcacaacggga-acgcaccctccaaaactccctaaacaccttaaacaac-ccaaaaagacca-acaagagc 31051003  T
Q  548 tagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctc 621  Q
    |||| ||||||||   ||||||| ||| |||||| |||||||||| |||| || ||| ||||||||||| ||||    
T  31051004 tagtgacgacgaacgtggacccgtgtaccagaggctgcctccaaaggaaaaca-cccaaacaaacaccctcctc 31051076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 322 - 626
Target Start/End: Original strand, 38639526 - 38639831
Alignment:
Q  322 aacaccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaa-accagcacacaacaagtagg 420  Q
    ||||||||||||| ||||| || |||| | || | ||||| |||||| ||||||||||||  ||| || ||||||| |  |||||||||||| ||||| |    
T  38639526 aacaccaaatcacaccaaacaatattgtagctaggcaccggctcccgatctcgaagcaaaactaaccggcccaccggagtaccagcacacaataagtatg 38639625  T
Q  421 acaaacga-caagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacacctt 519  Q
    |||||  | || |||||| |||||||||||||||||| | ||||| ||||||||| |  || ||| ||||| |||   |||| |||||| ||||||||||    
T  38639626 acaaaacatcatgataagcggtggtgcaagcaacaaaaagatcaaaaggaaaaggctcggcacaaagggactcgcattctcccaacaccttaaacacctt 38639725  T
Q  520 aacaactccaaaaaatgc-atacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgc 618  Q
    || | |   |||||| || | |||| || |||| |||||||| ||||| ||||||||||||||  |||| | | |||||||||| |||||||||| || |    
T  38639726 aa-acccaaaaaaaacgcaaaacaagagttagtgacgacgaacaaggatccgagtaacagaggcagcct-ctacagaaatcacctccaacaaacatccac 38639823  T
Q  619 ctcctcac 626  Q
    ||||||||    
T  38639824 ctcctcac 38639831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 330 - 626
Target Start/End: Complemental strand, 19673056 - 19672763
Alignment:
Q  330 atcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgac 429  Q
    |||| |||||| || |||||| || ||||| |||||||| |||||||||||| |||| || ||||| | ||| || | |  || ||| | ||||||| ||    
T  19673056 atcaagccaaacaagattgcagctagacactgactcccgatctcgaagcaaaagtaaccggcccactggaaatcaacgcgaaataagcaagacaaacaac 19672957  T
Q  430 aagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaaca-ccctaaacaccttaacaactcc 528  Q
    | |||| | |||||||||| | |||||||| |||| ||||||||| | | ||||||| ||| |||  || |||||   ||||||||||||||||||| ||    
T  19672956 atgatatgcggtggtgcaaacgacaaacaa-tcaaaaggaaaaggctcatctcaacgagacacgcaccccccaaaattccctaaacaccttaacaac-cc 19672859  T
Q  529 aaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||||   || |||| |||||||  ||||||| | ||| ||| ||||| |||| |||||||||| ||||||||||  |||||||||||||||||||||    
T  19672858 aaaaacacca-acaagagctagtggcgacgaacatggatccgtgtaacggaggatgcctccaaaggaaatcaccca-aacaaacacccgcctcctcac 19672763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 38637160 - 38637243
Alignment:
Q  142 aaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacc 225  Q
    |||||||||||  ||||||||||||| | ||||||||||||||||||||| |||| | || |||||||||||||||||||||||    
T  38637160 aaagctcttatctgaaagatcattcagcttccaccacctctcgacctccgatccaccaaaagaaaccataaaaagcccaaaacc 38637243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 251 - 382
Target Start/End: Original strand, 39421058 - 39421191
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattg 348  Q
    |||||||||||| | || ||||  ||||| ||||| ||||||||||||||| ||||||   || || ||||||| ||||||||||||||||| || ||||    
T  39421058 atcaaaagtgatcggcccaccaggctataagaccatatcagaagggcacccctcaccctcagtacattagagaaacaccaaatcacgccaaacaagattg 39421157  T
Q  349 caactggacaccgactcccggtctcgaagcaaac 382  Q
    || || |||||||| ||||| |||||||||||||    
T  39421158 cagctagacaccgattcccgatctcgaagcaaac 39421191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 2061678 - 2061746
Alignment:
Q  155 gaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaa 223  Q
    ||||||||||||||| ||||||||||||||||||||| |||| |||| |||| ||| ||||||||||||    
T  2061678 gaaagatcattcaacttccaccacctctcgacctccgatccaccgaaagaaatcatcaaaagcccaaaa 2061746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 450 - 624
Target Start/End: Complemental strand, 30964276 - 30964104
Alignment:
Q  450 caacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagcta 549  Q
    ||||||||||||||| ||||||||||| | | ||||| ||| |||  ||||||||| ||  |||||||| ||| || |||||||   || |||| |||||    
T  30964276 caacaaacaaatcaaaaggaaaaggttcaacacaacgtgacacgcaccctccaaactccgcaaacacctaaaccac-ccaaaaagcacaaacaatagcta 30964178  T
Q  550 gtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctc 624  Q
    || |||||||| | ||||||| |||||||||||||| |  ||| || |||| ||||||||| ||||| |||||||    
T  30964177 gtgacgacgaacatggacccgtgtaacagaggttgcttttaaaggatatca-ccccaacaagcacccacctcctc 30964104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 39420969 - 39421024
Alignment:
Q  171 tccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacca 226  Q
    ||||||||||||||| ||||| |||| ||||  |||||||||||||||||||||||    
T  39420969 tccaccacctctcgatctccgatccaccgaaaaaaaccataaaaagcccaaaacca 39421024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 540 - 626
Target Start/End: Complemental strand, 8254773 - 8254688
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||| ||||||| |||||||| | ||||||| |||||| ||||||| ||||||  ||||| |||| ||||| |||||||||||||||    
T  8254773 acaagagctagtgacgacgaacatggacccgtgtaacaaaggttgcttccaaagaaaatctcccc-aacaagcacccgcctcctcac 8254688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 540 - 626
Target Start/End: Complemental strand, 8268191 - 8268106
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||| ||||||| |||||||| | ||||||| |||||| ||||||| ||||||  ||||| |||| ||||| |||||||||||||||    
T  8268191 acaagagctagtgacgacgaacatggacccgtgtaacaaaggttgcttccaaagaaaatctcccc-aacaagcacccgcctcctcac 8268106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 1e-40; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 361 - 625
Target Start/End: Original strand, 10785489 - 10785748
Alignment:
Q  361 gactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaa 460  Q
    |||||||| ||||||||||||  ||| || ||||||| ||||||||||||||  |||| ||||||| |||||||| | || ||||||| |||| | ||||    
T  10785489 gactcccgatctcgaagcaaaattaaccggcccaccggaaaccagcacacaaacagtaagacaaaccacaagataggcgggggtgcaaacaacgatcaaa 10785588  T
Q  461 tcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaa 560  Q
         ||||||||| | ||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||| |||| ||||  | |||| ||||||||    
T  10785589 -----aggaaaaggctcagctcaatgggacctgctccctccaaacaccctaaacaccttaacaaccccaaaaa-tgcaaacaagggttagtgacgacgaa 10785682  T
Q  561 ta-aggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctca 625  Q
       | ||||| |||||||||||  |||||||||||||||||||||||| ||||||  |||||||||    
T  10785683 accaagacccaagtaacagaggcagcctccaaaagaaatcacccccaataaacacttgcctcctca 10785748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 355 - 626
Target Start/End: Complemental strand, 52278428 - 52278166
Alignment:
Q  355 gacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaagcaaca 454  Q
    ||||||| |||| |||||||||||||| |||||||  ||||||||||||| ||| ||| ||| | ||||||||||| |||||| ||||||| || |||||    
T  52278428 gacaccggctcctggtctcgaagcaaaagtaatcggtccaccgaaaaccaacacgcaataagcaagacaaacgacatgataagcggtggtgaaaacaaca 52278329  T
Q  455 aacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaac 554  Q
    |||||||||| | ||| ||| | | ||||||||||| |    |||||  || || |||||||||||||||  || ||||| ||  |||| ||||||||||    
T  52278328 aacaaatcaaaatgaataggctcatctcaacgggacac----cctcc--actccataaacaccttaacaa--cccaaaaacgccaacaagagctagtaac 52278237  T
Q  555 gacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||||| | ||||||| | |||| ||| | ||||||||  |||||| |||||||||||||| ||||||||||    
T  52278236 gacgaacatggacccgtgaaacaaaggcttcctccaaagaaaatca-ccccaacaaacacctgcctcctcac 52278166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 466 - 630
Target Start/End: Original strand, 9313487 - 9313653
Alignment:
Q  466 aggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactcc--aaaaaatgcatacaaaagctagtaacgacgaataa 563  Q
    ||||||||| | |||| ||||||||  ||| |||||||||||| ||||||||||| |||| ||  |||||| |||||||| ||||| | ||||| || ||    
T  9313487 aggaaaaggctcagcttaacgggactagcttcctccaaacaccataaacaccttagcaacccccaaaaaaacgcatacaagagctattgacgacaaacaa 9313586  T
Q  564 ggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcacatat 630  Q
    |||||| ||||||| ||| ||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  9313587 ggacccaagtaacaaaggctgccttcaaaagaaatcacccccaacaaacgccctcctcctcacatat 9313653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 9313115 - 9313466
Alignment:
Q  20 aaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaac 119  Q
    ||||| |||| ||| |||| |||||||||||| || ||||||| ||| |||  ||| ||||||||| ||||| ||||||| |||||| || |||||||||    
T  9313115 aaagcaaccattgttaaaacgatatccaataccactcatcgtcgctaatcacccccaaaagaaaaa-cacccttcaaaattaaactcccagtcctgaaac 9313213  T
Q  120 tccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagccc 219  Q
      |||||| |||| |||||| |||| ||| |||| ||| |||||| ||||  ||||||||| || ||||||| |||| |||| ||||||||||||||||     
T  9313214 --caaagctgagccacatccgaaaaactcgtatttgaaggatcatacaactgccaccacctatccacctccgatccaccgaaagaaaccataaaaagcca 9313311  T
Q  220 aaaaccacactatccaaagagcggatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggca-ccctcacccctggtgcacta 318  Q
    || | |  |||          | ||| ||| ||||||||||||   || || | ||| || |||||||||||||||||| ||||||| || | | ||| |    
T  9313312 aagaactgact---------cccgatctcgaatcaaaagtgatcagcccactagactttaggaccaaatcagaagggcacccctcacgcccgatacacga 9313402  T
Q  319 gag-aacaccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaa 381  Q
    ||| |||||||||||||| |||| ||||||||| || |||||| ||||||| ||||||||||||    
T  9313403 gagaaacaccaaatcacggcaaacaaaattgcagctagacaccaactcccgatctcgaagcaaa 9313466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 27102457 - 27102261
Alignment:
Q  27 ccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaa-tcaaactcacaatcctgaaactccaaa 125  Q
    |||||||||||| || |||||| || || |||||||||||||||  |||||||||||||| ||||||||||| || || || || ||||||| | | |||    
T  27102457 ccactgtaaaaacgaaatccaacaccactcatcgtcactactca--ccccaaagaaaaaatacccctcaaaaatccaaatcccattcctgaa-cactaaa 27102361  T
Q  126 gcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacc 225  Q
    || |||| ||| | |||  |||| |||  ||||||||||||| | ||||||||||||||||||||| |||| |||| |||||| ||||||||||||||||    
T  27102360 gctgagccacaacgaaac-gctcctatctgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaagaaaccgtaaaaagcccaaaacc 27102262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 31290925 - 31291030
Alignment:
Q  121 ccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagccca 220  Q
    ||||||| |||| |||||| |||||||| ||| ||||||||||  |||| ||||||||||||||||||||| |||| |||| ||||||||||||||||||    
T  31290925 ccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcgacctccgatccaccgaaagaaaccataaaaagccca 31291024  T
Q  221 aaacca 226  Q
    ||||||    
T  31291025 aaacca 31291030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 346 - 525
Target Start/End: Original strand, 6583333 - 6583511
Alignment:
Q  346 ttgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtg 445  Q
    ||||| || |||||||||||||| |||||||||||| |||| || |||||||| ||||| ||||||| ||||| ||| ||||||  |||| | |||||||    
T  6583333 ttgcagctagacaccgactcccgatctcgaagcaaaagtaaccggcccaccgacaaccaacacacaaaaagtatgac-aacgacgtgatatgcggtggtg 6583431  T
Q  446 caagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaac 525  Q
    ||| ||||||||  ||||| || ||||   | | | ||||| ||||| || ||| |||||||||||||||||||||||||    
T  6583432 caaacaacaaactgatcaaaagaaaaaaactcaacacaacgagacccacttccttcaaacaccctaaacaccttaacaac 6583511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 251 - 593
Target Start/End: Complemental strand, 7857689 - 7857344
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaacaccaaatcacgccaaagaaaattgc 349  Q
    |||||||||||| | || |||| ||| ||  |||||||||| ||||||||| || ||||  || ||| |||||||| || |||| | |||| | ||||||    
T  7857689 atcaaaagtgatcggcccaccagactttagaaccaaatcagcagggcacccctcgcccccagtacaccagagaacaacatatcaagtcaaacataattgc 7857590  T
Q  350 aactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaa-gataagtg-gtggtgca 447  Q
    |||| |||||| ||||||| ||||||||||||  |||||| ||||| | |||||||||||||| | ||| ||| |   |||| |||| | |  |||||||    
T  7857589 aactagacaccaactcccgatctcgaagcaaaaataatcggcccactggaaaccagcacacaatatgtaagacgataaacaatgatatgcgattggtgca 7857490  T
Q  448 agcaacaaacaaatcaataggaaaagg-tttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaag 546  Q
      |||||||  | |||  ||||||||| |  | | ||||||||| | || ||||||||||||||||||||||| ||||| || ||| | ||| |||| ||    
T  7857489 gacaacaaatcagtcacaaggaaaaggatcaaacacaacgggacacactccctccaaacaccctaaacaccttgacaac-cccaaagacgcaaacaagag 7857391  T
Q  547 ctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaa 593  Q
    ||||| |||||||| | |||||||||||||||||   ||||||||||    
T  7857390 ctagtgacgacgaacatggacccgagtaacagagccagcctccaaaa 7857344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 121 - 626
Target Start/End: Complemental strand, 16147733 - 16147229
Alignment:
Q  121 ccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaa--accat-aaaaagc 217  Q
    ||||||| |||| |||||| |||||||| |||  ||||||||||||||| | ||||||||||| ||||||| || | |||| |||  ||||| ||||||     
T  16147733 ccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatctaccgaaagaaataccataaaaaagt 16147634  T
Q  218 ccaaaaccacact--atccaaaga-------gcggatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcacc-ctcaccc 307  Q
    |||||| || |||  | |||||||        | ||||| | ||||||| | || | || ||||||||  | ||||||| |||||||| ||| |||||||    
T  16147633 ccaaaatcaaacttgacccaaagaactgactcccgatattgaatcaaaattcatcgtcccaccatacttaacgaccaaaacagaagggaacctctcaccc 16147534  T
Q  308 ctggtgcactagag-aacaccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagc 406  Q
    | ||| | |||||| |||||||||||| |||||| || |||||| || ||||  |||||||| |||||||  ||| ||||||| ||||||| || | | |    
T  16147533 ccggtacgctagagaaacaccaaatcaagccaaacaagattgcagctagacagtgactcccgatctcgaactaaaagtaatcggcccaccggaacctaac 16147434  T
Q  407 acacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctc-aacgggacccgctacctccaaac 505  Q
    |||||| ||||| |||||| |||| |||| | |||||||||| |    |||||||||| ||||||||| | ||||| || |||||  ||  |||||        
T  16147433 acacaataagtaagacaaatgacatgatatgcggtggtgcaaac----aacaaatcaaaaggaaaaggctcagctcaaatgggacatgcgccctcc---- 16147342  T
Q  506 accctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcaccccc 605  Q
         ||||||||||||||  || ||||| ||| | || ||||||| |||||||| | || |||| |||||||||| |||||||||| ||||||| ||||    
T  16147341 -----aaacaccttaacaa--cccaaaaacgcaaataagagctagtgacgacgaacatgggcccgtgtaacagaggctgcctccaaaggaaatca-cccc 16147250  T
Q  606 aacaaacacccgcctcctcac 626  Q
    ||  ||||||| |||||||||    
T  16147249 aagcaacacccacctcctcac 16147229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 489 - 626
Target Start/End: Complemental strand, 27102096 - 27101970
Alignment:
Q  489 acccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctc 588  Q
    ||||||| |||||||||||||||||||||||||||||           || |||| |||| || |||||||| ||||||||||||||||||||  |||||    
T  27102096 acccgcttcctccaaacaccctaaacaccttaacaac-----------caaacaagagctcgtgacgacgaagaaggacccgagtaacagaggccgcctc 27102008  T
Q  589 caaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||||||||  |||| ||||| ||||||||||||||||    
T  27102007 caaaagaaaataccctcaacagacacccgcctcctcac 27101970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 251 - 626
Target Start/End: Original strand, 46692864 - 46693239
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcacc-ctcacccctggtgcactagagaacac-caaatcacgccaaagaaa-att 347  Q
    |||||||||||| | || |||| ||||||| ||||||| || |||||||| ||| |||| ||| ||| |||||| |  ||||||| | |||| ||| |||    
T  46692864 atcaaaagtgatcggcccaccagactatatcaccaaattagcagggcacctctcgcccccggtacaccagagaaaaatcaaatcaagtcaaacaaagatt 46692963  T
Q  348 gcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgca 447  Q
    |||||| |||  ||||||||| ||||||||| ||   ||||| |||||||||||| ||||||||| | ||| |||||| |||| |  | |||  | |  |    
T  46692964 gcaactagacctcgactcccgatctcgaagccaaatgaatcggcccaccgaaaactagcacacaatatgtaagacaaaagacatggcatgtgaagtttga 46693063  T
Q  448 agcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagc 547  Q
    | ||||||||||||||| | ||||||| | | | ||||   || | |  ||||||||| || ||||||||| ||  || || ||||   || |||| |||    
T  46693064 a-caacaaacaaatcaaaaagaaaaggctcaacacaacataacacacaccctccaaactccgtaaacacctaaaacac-ccgaaaagcacaaacaagagc 46693161  T
Q  548 tagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||| |||||||| | | ||||| |||||||||||||| || ||| ||||||| ||||||||||||||| |||||||||    
T  46693162 tagtgacgacgaacatgtacccgtgtaacagaggttgcttctaaaggaaatca-ccccaacaaacacccacctcctcac 46693239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 6583122 - 6583227
Alignment:
Q  121 ccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagccca 220  Q
    ||||||| ||||  ||||| |||||||| |||  ||||||||| ||| | ||||||||||||||||||||| | || |||| |||||||||||||||  |    
T  6583122 ccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgattcaccgaaagaaaccataaaaagcaaa 6583221  T
Q  221 aaacca 226  Q
    ||||||    
T  6583222 aaacca 6583227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 335 - 448
Target Start/End: Complemental strand, 17033536 - 17033423
Alignment:
Q  335 gccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagat 434  Q
    |||||| || ||||||||| ||| || | || || ||||||| |||| |||| || ||||||  || ||||||||||| ||||| |||||||||||||||    
T  17033536 gccaaacaagattgcaactagacgccaattctcgatctcgaaacaaaagtaaccggcccaccagaatccagcacacaataagtaagacaaacgacaagat 17033437  T
Q  435 aagtggtggtgcaa 448  Q
      ||||||||||||    
T  17033436 ttgtggtggtgcaa 17033423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 540 - 629
Target Start/End: Original strand, 24684811 - 24684899
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcacata 629  Q
    |||| ||||||| |||| ||| ||||||||  |||||| ||||||| |||||| || |||||||| ||||| ||||||||||||||||||    
T  24684811 acaagagctagtgacgatgaacaaggacccatgtaacataggttgcttccaaaggacatcacccc-aacaaccacccgcctcctcacata 24684899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 11439827 - 11439913
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactc 106  Q
    |||||| ||||| ||||||| ||||||||| || ||  ||||||||||||| | |||||||| |||||||||||||| ||| ||||||    
T  11439827 gaaagcaaccaccgtaaaaatgatatccaacaccacttatcgtcactactccacccccaaag-aaaaacacccctcagaattaaactc 11439913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 16577428 - 16577367
Alignment:
Q  129 gagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctcc 190  Q
    |||| |||||| |||||||| ||||| |||||||||||| | ||||||||||||| ||||||    
T  16577428 gagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctcaacctcc 16577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 386
Target Start/End: Complemental strand, 34774877 - 34774771
Alignment:
Q  281 gaccaaatcagaagggcacc-ctcacccctggtgcactagagaa-caccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagc 378  Q
    |||||||||||||||||||| |||||||| | |  ||||||||| || ||||||| |||||| || |||| |  | |||||||||||||| |||||||||    
T  34774877 gaccaaatcagaagggcaccactcacccccg-tatactagagaaacatcaaatcaagccaaacaagattgtagttagacaccgactcccgttctcgaagc 34774779  T
Q  379 aaacgtaa 386  Q
    ||| ||||    
T  34774778 aaaagtaa 34774771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 448
Target Start/End: Original strand, 38544878 - 38544981
Alignment:
Q  345 attgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggt 444  Q
    |||||| || |||||| ||||||  |||||||||||| ||||||| |||||   || ||||||||||| | ||| ||||||||||| |||  | ||||||    
T  38544878 attgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaatatgtaagacaaacgacatgatttgcggtggt 38544977  T
Q  445 gcaa 448  Q
    ||||    
T  38544978 gcaa 38544981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 251 - 412
Target Start/End: Complemental strand, 24658965 - 24658803
Alignment:
Q  251 atcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccctggtgcactagagaacaccaaatcacgccaaagaaaattgc 349  Q
    |||||||||||||| || |||| ||| ||  |||||||||| ||||||||| |  |||| | | ||| ||||||||||| |||| | |||| |  |||||    
T  24658965 atcaaaagtgattggcccaccagactttagaaccaaatcagcagggcaccccttgcccccgatacaccagagaacaccatatcaagtcaaacatgattgc 24658866  T
Q  350 aactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaa 412  Q
    | || |||||| ||||||| ||| ||||||||  ||| || ||||||| |  |||||||||||    
T  24658865 agctagacaccaactcccgatcttgaagcaaaaataaccggcccaccggactccagcacacaa 24658803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 626
Target Start/End: Original strand, 31586096 - 31586181
Alignment:
Q  540 acaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaacacccgcctcctcac 626  Q
    |||| ||| ||| |||||||| | ||||||| |||||||||||| | || ||| ||||||| ||||||||| ||||| |||||||||    
T  31586096 acaagagccagtgacgacgaacatggacccgtgtaacagaggtttcttctaaaggaaatca-ccccaacaagcacccacctcctcac 31586181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 32864502 - 32864572
Alignment:
Q  156 aaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcccaaaacca 226  Q
    ||||||||  || ||||||||||||| ||||||| | ||||   || ||||||||||||||||||||||||    
T  32864502 aaagatcaaacatcatccaccacctcccgacctctgatccacaaaaagaaaccataaaaagcccaaaacca 32864572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 355 - 460
Target Start/End: Original strand, 32864713 - 32864819
Alignment:
Q  355 gacaccgactcccggtctcgaagcaaacgtaatcgccccacc-gaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggtgcaagcaac 453  Q
    |||||||||||| | | |||||||||| |||| || |||||| |||||| ||||||||| | ||| |||||| |||| ||||||  | ||||||| ||||    
T  32864713 gacaccgactcctgatttcgaagcaaaagtaaccggcccaccggaaaactagcacacaaaacgtatgacaaaagacatgataagcagaggtgcaaacaac 32864812  T
Q  454 aaacaaa 460  Q
    || ||||    
T  32864813 aatcaaa 32864819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 34775144 - 34774943
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||| |||| |||||||||| || |||| | ||||||| |||||||||||||  |||||| ||||   ||||| | ||||  |||||| ||||||| ||     
T  34775144 gaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtcactactca--ccccaatgaaa---cacccgtaaaaaataaactcccaatcctcaa- 34775051  T
Q  119 ctccaaagcagagcaacatcca-aaaagctcttattcgaaaga-tcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaag 216  Q
    | ||||||| |||| ||||||  |||| ||| |||  |||| | ||| ||| | ||||||||||||| ||||||  | || |||| ||||||||||||||    
T  34775050 caccaaagctgagccacatccggaaaaactcctatctgaaacaatcaatcagcttccaccacctctcaacctccaattcaccgaaagaaaccataaaaag 34774951  T
Q  217 cccaaaac 224  Q
    ||||||||    
T  34774950 cccaaaac 34774943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 612
Target Start/End: Original strand, 50589554 - 50589608
Alignment:
Q  558 gaataaggacccgagtaacagaggttgcctccaaaagaaatcacccccaacaaac 612  Q
    ||||| |||||||| |||||||||  ||||||||||| |||||||| ||||||||    
T  50589554 gaatatggacccgaataacagaggcggcctccaaaaggaatcacccacaacaaac 50589608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 17033621 - 17033572
Alignment:
Q  252 tcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc 301  Q
    ||||||||||| | || |||| |||||| |||||||||||||||||||||    
T  17033621 tcaaaagtgatcggcccaccagactataggaccaaatcagaagggcaccc 17033572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 46768435 - 46768360
Alignment:
Q  40 gatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaa 117  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||||| | ||||||| |  |||||| ||||||||||    
T  46768435 gatatccaacactgcccatcgtcactactc-acccccaaagaaaaaa-aaccctcaagactaaactcccaatcctgaa 46768360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 83; Significance: 7e-39; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 58401 - 57989
Alignment:
Q  19 gaaagcgaccactgtaaaaaagatatccaatactacccatcgtcactactcaagccccaaagaaaaaacacccctcaaaatcaaactcacaatcctgaaa 118  Q
    |||| |||||| |||||||  ||||||||| ||||||| |||||||||||||  ||| |||||| || ||| ||||||||| |||||| || ||| |||     
T  58401 gaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacaccc-aaagaacaa-cactcctcaaaattaaactctcagtcccgaa- 58305  T
Q  119 ctccaaagcagagcaacatccaaaaagctcttattcgaaagatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagcc 218  Q
    | ||||||| |||| |||| | |||||||||||| |||||||| ||||| | |||| || ||||||||||||| |||| |||| ||||||||||||||||    
T  58304 caccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctcgacctccgatccaccgaaagaaaccataaaaagcc 58205  T
Q  219 caaaaccacact--atccaaaga-------gcggatatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccct-cacccc 308  Q
     ||||||| |||  ||||||| |        | ||| | | |||||||||||| | || |||| ||| || ||||||||| |||||||||| | |||||     
T  58204 taaaaccaaacttgatccaaacaattgacttccgatcttgaatcaaaagtgatcggcccaccaaactttaggaccaaatctgaagggcaccatacaccct 58105  T
Q  309 tggtgcactagag-aacaccaaatcacgccaaagaaaattgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagca 407  Q
     ||| ||| |||| ||||||||||||||||||| || |||||| || |||| ||||||||| |||||||||||| |||| || || |  | ||| |||||    
T  58104 aggtacaccagagaaacaccaaatcacgccaaacaagattgcagctagacaacgactcccgatctcgaagcaaaagtaaccggcctaatggaaatcagca 58005  T
Q  408 cacaacaagtaggaca 423  Q
    ||||| ||||| ||||    
T  58004 cacaaaaagtatgaca 57989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 493 - 626
Target Start/End: Complemental strand, 57985 - 57852
Alignment:
Q  493 gctacctccaaacaccctaaacaccttaacaactccaaaaaatgcatacaaaagctagtaacgacgaataaggacccgagtaacagaggttgcctccaaa 592  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| |||  ||||||| |||||||| ||||||  |||| |||||||| |||||||||    
T  57985 gctacctccaaacaccctaaacaccttaacaac-ccaaaaaacgcaaacatgagctagtgacgacgaacaaggacatgagttacagaggtagcctccaaa 57887  T
Q  593 agaaatca-cccccaacaaacacccgcctcctcac 626  Q
    ||||| || |||||||||||||||| |||||||||    
T  57886 agaaaccaccccccaacaaacacccacctcctcac 57852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 121 - 500
Target Start/End: Complemental strand, 19559 - 19167
Alignment:
Q  121 ccaaagcagagcaacatccaaaaagctcttattcgaaa-gatcattcaacatccaccacctctcgacctccgttccatcgaaggaaaccataaaaagccc 219  Q
    |||||||||||| |||| | |||||||| | | ||||| ||| ||||| | ||||||| ||||||||||||| |||| |||| |||||||||||||||||    
T  19559 ccaaagcagagccacattcgaaaagctcctgtccgaaaagattattcagcttccaccaactctcgacctccgatccaccgaaagaaaccataaaaagccc 19460  T
Q  220 aaaaccacact--atccaaagagcgga-------tatcgcatcaaaagtgattgaccgaccatactatatgaccaaatcagaagggcaccc-tcacccct 309  Q
    ||||||| |||  | ||||||| | ||       | ||| |||||||||||| | || |||| ||| || ||||||||||||||||||||| |||||  |    
T  19459 aaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggaccaaatcagaagggcacccctcaccttt 19360  T
Q  310 ggtgcactagagaa-caccaaatcacgccaaagaaa-attgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagca 407  Q
    |||  || |||||| || ||||| | ||||||  || | |||| || |||||||||||||| ||||||||||||  ||| || |||| ||  ||||||||    
T  19359 ggtataccagagaaacatcaaattaagccaaaacaagaatgcagctagacaccgactcccgatctcgaagcaaaattaaccgacccatcgggaaccagca 19260  T
Q  408 cacaacaagtaggacaaacgacaagataagtggtggtgcaagcaacaaacaaatcaataggaaaaggtttagctcaacgggacccgctacctc 500  Q
     ||||  |||| ||||||||||| ||||  ||||||||||| ||||||||| ||| | ||||||||| | ||||||| |||||| ||| ||||    
T  19259 tacaaacagtaagacaaacgacatgatagatggtggtgcaaacaacaaacatatctaaaggaaaaggctcagctcaatgggaccggctccctc 19167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 448
Target Start/End: Original strand, 1157 - 1260
Alignment:
Q  345 attgcaactggacaccgactcccggtctcgaagcaaacgtaatcgccccaccgaaaaccagcacacaacaagtaggacaaacgacaagataagtggtggt 444  Q
    |||||| || |||||| ||||||  |||||||||||| ||||||| |||||   || ||||||||||| | ||| ||||||||||| |||  | ||||||    
T  1157 attgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaatatgtaagacaaacgacatgatttgcggtggt 1256  T
Q  445 gcaa 448  Q
    ||||    
T  1257 gcaa 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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