View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21284_low_22 (Length: 457)
Name: NF21284_low_22
Description: NF21284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21284_low_22 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 20097950 - 20098400
Alignment:
| Q |
14 |
tctacaacatcttcgacataatcctcgttcacgctgctgataaaaaacggcgagatccaagcatgaaccggttgagagtaaaaattgatactaagatgaa |
113 |
Q |
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| T |
20097950 |
tctacaacatcttcgacataatcctcgttcacgctgctgataaaaaacggcgagatccaagcatgaaccggttgagagtaaaaattgatactaagatgaa |
20098049 |
T |
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| Q |
114 |
tgagatttctgtttaccacaacggtgctccattaataggcgatgaaacatttcgtgatgtaataaacatttttgatctcacgaatagttactcgacttgt |
213 |
Q |
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| T |
20098050 |
tgagatttctgtttaccacaacggtgctccattaataggcgatgaaacatttgatgatgtaataaacaattttgatctcacgaatagttactcgacttgt |
20098149 |
T |
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| Q |
214 |
ttttgggttgagcttgctgatgaatgtgggatttcgagacaggtagttattcctttctttc-------tgcttaa-----gtgctcaaaat-ttttggtc |
300 |
Q |
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| T |
20098150 |
ttttgggttgagcttgctgatgaatgtgggatttcgagacaggtagttattcctttcttcctttgagattcttgattttggtgctttaattgttttggtc |
20098249 |
T |
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| Q |
301 |
tttgattgtccatttgtctgggttgtatttttgtggtatgaaggaattccataataacatgaatgtaaagtttgagcgaggggtaaccaaatgcgaagtt |
400 |
Q |
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| T |
20098250 |
tttgattttccatttgtcttggttgtatttttgtgttatgaaggagttcagtaataatatggatgttaagtttgagcgagtggt------atgcaaagtt |
20098343 |
T |
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| Q |
401 |
gatgactactcgtgcacggtgacctttaagcctgacttaacgaatgttgaaatgacc |
457 |
Q |
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| T |
20098344 |
gatgactactcgaccatggtgacctttaagcctgacttaaccaagtttgaaatgacc |
20098400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 33373117 - 33372859
Alignment:
| Q |
14 |
tctacaacatcttcgacataatcctcgttcacgctgctgataaaaaacggcgagatccaagcatgaaccggttgagagtaaaaattgatactaagatgaa |
113 |
Q |
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| T |
33373117 |
tctacaacatcttcgacataatccttattcacgctgctgatagaaaacggcgagatccatacatggaccggttggaagtaaacattattcctgaggttaa |
33373018 |
T |
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| Q |
114 |
tgagatttctgtttaccacaacggtgctccattaataggcgatgaaacatttcgtgatgtaataaacatttttgatctcacgaatagttactcgacttgt |
213 |
Q |
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| T |
33373017 |
tgagatttatgtttacatgaaaggtgttccacttttaggcgatgaaacatttgataatgtaatcaaaaagtttcatcccacgaatctttactcgtcttat |
33372918 |
T |
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| Q |
214 |
ttttgggttgagcttgctgatgaatgtgggatttcgagacaggtagttattcctttctt |
272 |
Q |
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| T |
33372917 |
tgttatgttgagattgctgatggacagaggttttggagtcaggtggttattcctttctt |
33372859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 33372051 - 33372015
Alignment:
| Q |
282 |
gtgctcaaaatttttggtctttgattgtccatttgtc |
318 |
Q |
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| T |
33372051 |
gtgctcaaaatttttggtctttgattttccatttgtc |
33372015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 18493616 - 18493743
Alignment:
| Q |
14 |
tctacaacatcttcgacataatcctcgttcacgctgctgataaaaaacggcgagatccaagcatgaaccggttgagagtaaaaattgatactaagatgaa |
113 |
Q |
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| T |
18493616 |
tctacaacatcttcgacataatcctcgttcacgctgttgaaaaaaaacggcgtgatccaagcatgaaccggttgagagtaaaaattgatactaagatgaa |
18493715 |
T |
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| Q |
114 |
tgagatttctgtttaccacaacggtgct |
141 |
Q |
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| T |
18493716 |
tgagatttctattcaccacaacggtgct |
18493743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 182 - 385
Target Start/End: Original strand, 18493743 - 18493957
Alignment:
| Q |
182 |
tttttgatctcacgaatagttactcgacttgtttttgggttgagcttgctgatgaatgtgggatttcgagacaggtagttattcctttctttct------ |
275 |
Q |
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| T |
18493743 |
tttttgatctcacgaatagttactcgacttgttttttggttgagcttgctgatgaatgggggatttcgagacaggtagttattcctttcttcctttgaga |
18493842 |
T |
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| Q |
276 |
------gcttaagtgctcaaaatttttggtctttgattgtccatttgtctgggttgtatttttgtggtatgaaggaattccataataacatgaatgtaaa |
369 |
Q |
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| T |
18493843 |
tttttgattttggtgct-ttaatttttggtctttgattttccatttgtcttggttgtatttttgtgttatgaaggagttcggtaataatatggatgctaa |
18493941 |
T |
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| Q |
370 |
gtttgagcgaggggta |
385 |
Q |
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| T |
18493942 |
gtttgagcgagtggta |
18493957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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